Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4921 and GFF4922 are separated by 185 nucleotides GFF4922 and GFF4923 are separated by 6 nucleotides GFF4923 and GFF4924 are separated by 40 nucleotides GFF4924 and GFF4925 overlap by 8 nucleotides
GFF4921 - hypothetical protein, at 14,137 to 14,517
GFF4921
GFF4922 - hypothetical protein, at 14,703 to 15,194
GFF4922
GFF4923 - Substrate-specific component BioY of biotin ECF transporter, at 15,201 to 15,791
GFF4923
GFF4924 - Transmembrane component BioN of energizing module of biotin ECF transporter, at 15,832 to 16,425
GFF4924
GFF4925 - ATPase component BioM of energizing module of biotin ECF transporter, at 16,418 to 17,137
GFF4925
Position (kb) 15
16 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 14.249 kb on + strand, within GFF4921 at 14.249 kb on + strand, within GFF4921 at 14.250 kb on - strand, within GFF4921 at 14.250 kb on - strand, within GFF4921 at 14.250 kb on - strand, within GFF4921 at 14.354 kb on + strand, within GFF4921 at 14.354 kb on + strand, within GFF4921 at 14.354 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.442 kb on - strand, within GFF4921 at 14.442 kb on - strand, within GFF4921 at 14.442 kb on - strand, within GFF4921 at 14.442 kb on - strand, within GFF4921 at 14.442 kb on - strand, within GFF4921 at 14.602 kb on + strand at 14.602 kb on + strand at 14.606 kb on + strand at 14.606 kb on + strand at 14.606 kb on + strand at 14.606 kb on + strand at 14.607 kb on - strand at 14.607 kb on - strand at 14.607 kb on - strand at 14.607 kb on - strand at 14.607 kb on - strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.692 kb on - strand at 14.692 kb on - strand at 14.692 kb on - strand at 14.692 kb on - strand at 14.692 kb on - strand at 14.692 kb on - strand at 14.874 kb on + strand, within GFF4922 at 14.874 kb on + strand, within GFF4922 at 14.874 kb on + strand, within GFF4922 at 14.875 kb on - strand, within GFF4922 at 14.875 kb on - strand, within GFF4922 at 14.934 kb on + strand, within GFF4922 at 14.934 kb on + strand, within GFF4922 at 14.934 kb on + strand, within GFF4922 at 14.934 kb on + strand, within GFF4922 at 14.934 kb on + strand, within GFF4922 at 14.935 kb on - strand, within GFF4922 at 14.935 kb on - strand, within GFF4922 at 14.935 kb on - strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.084 kb on + strand, within GFF4922 at 15.084 kb on + strand, within GFF4922 at 15.084 kb on + strand, within GFF4922 at 15.085 kb on - strand, within GFF4922 at 15.147 kb on + strand at 15.147 kb on + strand at 15.147 kb on + strand at 15.147 kb on + strand at 15.147 kb on + strand at 15.147 kb on + strand at 15.147 kb on + strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.370 kb on + strand, within GFF4923 at 15.370 kb on + strand, within GFF4923 at 15.370 kb on + strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.748 kb on + strand at 15.748 kb on + strand at 15.748 kb on + strand at 15.748 kb on + strand at 15.748 kb on + strand at 15.748 kb on + strand at 15.748 kb on + strand at 15.748 kb on + strand at 15.748 kb on + strand at 15.748 kb on + strand at 15.748 kb on + strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.749 kb on - strand at 15.947 kb on + strand, within GFF4924 at 15.947 kb on + strand, within GFF4924 at 15.947 kb on + strand, within GFF4924 at 15.977 kb on + strand, within GFF4924 at 15.978 kb on - strand, within GFF4924 at 16.412 kb on + strand at 16.413 kb on - strand at 16.413 kb on - strand at 16.419 kb on + strand at 16.470 kb on + strand at 16.548 kb on + strand, within GFF4925 at 16.548 kb on + strand, within GFF4925 at 16.549 kb on - strand, within GFF4925
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 14,249 + GFF4921 0.29 -0.6 14,249 + GFF4921 0.29 -0.1 14,250 - GFF4921 0.30 -1.0 14,250 - GFF4921 0.30 -0.4 14,250 - GFF4921 0.30 -0.2 14,354 + GFF4921 0.57 +2.5 14,354 + GFF4921 0.57 -0.4 14,354 + GFF4921 0.57 -0.2 14,441 + GFF4921 0.80 -0.0 14,441 + GFF4921 0.80 -0.7 14,441 + GFF4921 0.80 -0.5 14,441 + GFF4921 0.80 -0.2 14,441 + GFF4921 0.80 -0.1 14,441 + GFF4921 0.80 +2.2 14,441 + GFF4921 0.80 -1.2 14,442 - GFF4921 0.80 -0.0 14,442 - GFF4921 0.80 -0.0 14,442 - GFF4921 0.80 -0.4 14,442 - GFF4921 0.80 -0.1 14,442 - GFF4921 0.80 -0.4 14,602 + -0.5 14,602 + -0.6 14,606 + -0.5 14,606 + +1.1 14,606 + -0.8 14,606 + -1.1 14,607 - +0.0 14,607 - +1.0 14,607 - +0.2 14,607 - +0.4 14,607 - -0.3 14,691 + -0.4 14,691 + -0.3 14,691 + -0.3 14,691 + +0.9 14,691 + -0.5 14,691 + -0.7 14,691 + -1.0 14,691 + -0.7 14,691 + -0.5 14,692 - -1.4 14,692 - -1.1 14,692 - +0.4 14,692 - -0.9 14,692 - -1.4 14,692 - -0.8 14,874 + GFF4922 0.35 -0.9 14,874 + GFF4922 0.35 +0.2 14,874 + GFF4922 0.35 +1.8 14,875 - GFF4922 0.35 -0.4 14,875 - GFF4922 0.35 -0.9 14,934 + GFF4922 0.47 +1.4 14,934 + GFF4922 0.47 -0.2 14,934 + GFF4922 0.47 -0.7 14,934 + GFF4922 0.47 -0.1 14,934 + GFF4922 0.47 +0.3 14,935 - GFF4922 0.47 +0.5 14,935 - GFF4922 0.47 +0.6 14,935 - GFF4922 0.47 -0.5 15,072 + GFF4922 0.75 +0.1 15,072 + GFF4922 0.75 -0.1 15,072 + GFF4922 0.75 -0.5 15,072 + GFF4922 0.75 -0.4 15,072 + GFF4922 0.75 -0.3 15,072 + GFF4922 0.75 -0.3 15,072 + GFF4922 0.75 +0.7 15,072 + GFF4922 0.75 -0.8 15,072 + GFF4922 0.75 -0.5 15,072 + GFF4922 0.75 +0.1 15,072 + GFF4922 0.75 -0.6 15,072 + GFF4922 0.75 -0.8 15,072 + GFF4922 0.75 +0.0 15,072 + GFF4922 0.75 -0.1 15,072 + GFF4922 0.75 -1.0 15,072 + GFF4922 0.75 +1.0 15,072 + GFF4922 0.75 +0.2 15,072 + GFF4922 0.75 +0.2 15,072 + GFF4922 0.75 -0.1 15,073 - GFF4922 0.75 -0.1 15,073 - GFF4922 0.75 -0.8 15,073 - GFF4922 0.75 +0.0 15,073 - GFF4922 0.75 +0.8 15,073 - GFF4922 0.75 -0.6 15,073 - GFF4922 0.75 -0.4 15,084 + GFF4922 0.77 -0.3 15,084 + GFF4922 0.77 +0.3 15,084 + GFF4922 0.77 +0.2 15,085 - GFF4922 0.78 +0.2 15,147 + +0.9 15,147 + -0.5 15,147 + -0.4 15,147 + +0.2 15,147 + -0.0 15,147 + -1.2 15,147 + +0.2 15,148 - +0.3 15,148 - -0.4 15,148 - +0.1 15,148 - -1.1 15,148 - -0.2 15,148 - +0.2 15,148 - +1.0 15,148 - +0.1 15,148 - +0.7 15,370 + GFF4923 0.29 -0.5 15,370 + GFF4923 0.29 +0.1 15,370 + GFF4923 0.29 +0.6 15,371 - GFF4923 0.29 -2.5 15,371 - GFF4923 0.29 -0.0 15,371 - GFF4923 0.29 +0.8 15,371 - GFF4923 0.29 +0.4 15,371 - GFF4923 0.29 -0.0 15,371 - GFF4923 0.29 -1.0 15,371 - GFF4923 0.29 +0.6 15,748 + +0.7 15,748 + -0.2 15,748 + +0.6 15,748 + +0.2 15,748 + +0.2 15,748 + +0.4 15,748 + -2.1 15,748 + -0.1 15,748 + -0.1 15,748 + +2.8 15,748 + -0.8 15,749 - -0.8 15,749 - -0.2 15,749 - -0.0 15,749 - -1.8 15,749 - -0.5 15,749 - -0.1 15,749 - -0.5 15,749 - -0.8 15,749 - -0.3 15,749 - -0.0 15,749 - +1.1 15,749 - -0.7 15,947 + GFF4924 0.19 +0.0 15,947 + GFF4924 0.19 -0.0 15,947 + GFF4924 0.19 -0.8 15,977 + GFF4924 0.24 -0.4 15,978 - GFF4924 0.25 -1.3 16,412 + -1.9 16,413 - -0.0 16,413 - +0.2 16,419 + -2.0 16,470 + -0.0 16,548 + GFF4925 0.18 -0.1 16,548 + GFF4925 0.18 +0.6 16,549 - GFF4925 0.18 -1.4
Or see this region's nucleotide sequence