Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4884 and GFF4883 overlap by 27 nucleotides GFF4883 and GFF4885 overlap by 1 nucleotides GFF4885 and GFF4886 are separated by 147 nucleotides GFF4886 and GFF4887 are separated by 142 nucleotides GFF4887 and GFF4888 are separated by 63 nucleotides GFF4888 and GFF4889 are separated by 41 nucleotides
GFF4884 - UPF0380 proteins YafZ and homologs, at 251,947 to 252,771
GFF4884
GFF4883 - Translation-disabling ACNase RloC, at 252,745 to 253,371
GFF4883
GFF4885 - FIG00582571: hypothetical protein, at 253,371 to 253,559
GFF4885
GFF4886 - hypothetical protein, at 253,707 to 254,006
GFF4886
GFF4887 - FIG00582580: hypothetical protein, at 254,149 to 254,427
GFF4887
GFF4888 - Mlr6156 protein, at 254,491 to 254,841
GFF4888
GFF4889 - no description, at 254,883 to 255,038
GFF4889
Position (kb) 253
254
255 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 253.035 kb on + strand, within GFF4883 at 253.035 kb on + strand, within GFF4883 at 253.036 kb on - strand, within GFF4883 at 253.227 kb on + strand, within GFF4883 at 253.228 kb on - strand, within GFF4883 at 253.228 kb on - strand, within GFF4883 at 253.228 kb on - strand, within GFF4883 at 253.228 kb on - strand, within GFF4883 at 253.305 kb on + strand, within GFF4883 at 253.305 kb on + strand, within GFF4883 at 253.305 kb on + strand, within GFF4883 at 253.305 kb on + strand, within GFF4883 at 253.306 kb on - strand, within GFF4883 at 253.306 kb on - strand, within GFF4883 at 253.306 kb on - strand, within GFF4883 at 253.306 kb on - strand, within GFF4883 at 253.306 kb on - strand, within GFF4883 at 253.306 kb on - strand, within GFF4883 at 253.306 kb on - strand, within GFF4883 at 253.306 kb on - strand, within GFF4883 at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.345 kb on + strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.346 kb on - strand at 253.354 kb on + strand at 253.354 kb on + strand at 253.354 kb on + strand at 253.354 kb on + strand at 253.354 kb on + strand at 253.355 kb on - strand at 253.355 kb on - strand at 253.355 kb on - strand at 253.557 kb on + strand at 253.557 kb on + strand at 253.557 kb on + strand at 253.557 kb on + strand at 253.557 kb on + strand at 253.557 kb on + strand at 253.557 kb on + strand at 253.557 kb on + strand at 253.558 kb on - strand at 253.558 kb on - strand at 253.558 kb on - strand at 253.674 kb on + strand at 253.674 kb on + strand at 253.674 kb on + strand at 253.675 kb on - strand at 253.675 kb on - strand at 253.896 kb on + strand, within GFF4886 at 253.896 kb on + strand, within GFF4886 at 253.896 kb on + strand, within GFF4886 at 253.969 kb on - strand, within GFF4886 at 253.969 kb on - strand, within GFF4886 at 253.969 kb on - strand, within GFF4886 at 254.004 kb on + strand at 254.004 kb on + strand at 254.004 kb on + strand at 254.004 kb on + strand at 254.004 kb on + strand at 254.004 kb on + strand at 254.005 kb on - strand at 254.005 kb on - strand at 254.005 kb on - strand at 254.005 kb on - strand at 254.005 kb on - strand at 254.005 kb on - strand at 254.005 kb on - strand at 254.005 kb on - strand at 254.219 kb on + strand, within GFF4887 at 254.220 kb on - strand, within GFF4887 at 254.220 kb on - strand, within GFF4887 at 254.237 kb on + strand, within GFF4887 at 254.238 kb on - strand, within GFF4887 at 254.238 kb on - strand, within GFF4887 at 254.238 kb on - strand, within GFF4887 at 254.264 kb on + strand, within GFF4887 at 254.265 kb on - strand, within GFF4887 at 254.265 kb on - strand, within GFF4887 at 254.310 kb on + strand, within GFF4887 at 254.310 kb on + strand, within GFF4887 at 254.311 kb on - strand, within GFF4887 at 254.311 kb on - strand, within GFF4887 at 254.311 kb on - strand, within GFF4887 at 254.311 kb on - strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.312 kb on + strand, within GFF4887 at 254.313 kb on - strand, within GFF4887 at 254.313 kb on - strand, within GFF4887 at 254.313 kb on - strand, within GFF4887 at 254.313 kb on - strand, within GFF4887 at 254.313 kb on - strand, within GFF4887 at 254.313 kb on - strand, within GFF4887 at 254.313 kb on - strand, within GFF4887 at 254.313 kb on - strand, within GFF4887 at 254.313 kb on - strand, within GFF4887 at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.408 kb on + strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.409 kb on - strand at 254.531 kb on + strand, within GFF4888 at 254.531 kb on + strand, within GFF4888 at 254.531 kb on + strand, within GFF4888 at 254.532 kb on - strand, within GFF4888 at 254.532 kb on - strand, within GFF4888 at 254.575 kb on + strand, within GFF4888 at 254.576 kb on - strand, within GFF4888 at 254.647 kb on + strand, within GFF4888 at 254.854 kb on + strand at 254.854 kb on + strand at 254.854 kb on + strand at 254.854 kb on + strand at 254.854 kb on + strand at 254.854 kb on + strand at 254.854 kb on + strand at 254.855 kb on - strand at 254.855 kb on - strand at 254.855 kb on - strand at 254.855 kb on - strand at 254.855 kb on - strand at 254.855 kb on - strand at 254.855 kb on - strand at 254.855 kb on - strand at 254.855 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 253,035 + GFF4883 0.46 -0.8 253,035 + GFF4883 0.46 +0.5 253,036 - GFF4883 0.46 +1.3 253,227 + GFF4883 0.77 -0.3 253,228 - GFF4883 0.77 +0.7 253,228 - GFF4883 0.77 -0.2 253,228 - GFF4883 0.77 -1.0 253,228 - GFF4883 0.77 +1.5 253,305 + GFF4883 0.89 -1.9 253,305 + GFF4883 0.89 -0.0 253,305 + GFF4883 0.89 -0.6 253,305 + GFF4883 0.89 -0.3 253,306 - GFF4883 0.89 -1.5 253,306 - GFF4883 0.89 -0.3 253,306 - GFF4883 0.89 -0.3 253,306 - GFF4883 0.89 +0.0 253,306 - GFF4883 0.89 +0.1 253,306 - GFF4883 0.89 -0.3 253,306 - GFF4883 0.89 +0.7 253,306 - GFF4883 0.89 -1.3 253,345 + -0.3 253,345 + +0.1 253,345 + +0.3 253,345 + +0.9 253,345 + +0.3 253,345 + -2.0 253,345 + +0.1 253,345 + -2.7 253,345 + +0.2 253,345 + -0.4 253,345 + -0.6 253,345 + -0.2 253,345 + -0.0 253,345 + +0.7 253,345 + -0.7 253,345 + +0.8 253,345 + +0.2 253,345 + +0.3 253,345 + +1.2 253,345 + +0.3 253,345 + +3.1 253,345 + -0.8 253,345 + -0.3 253,345 + -0.4 253,345 + -1.6 253,345 + -0.6 253,346 - +0.4 253,346 - -0.4 253,346 - -1.4 253,346 - +0.2 253,346 - +0.6 253,346 - -1.3 253,346 - -0.4 253,346 - +0.6 253,346 - -0.2 253,346 - +0.0 253,346 - +0.3 253,346 - +0.0 253,346 - +0.1 253,346 - +0.5 253,346 - +0.3 253,346 - -0.5 253,346 - -0.6 253,346 - -1.0 253,346 - +0.0 253,346 - -1.0 253,354 + -0.4 253,354 + -0.4 253,354 + -0.4 253,354 + -1.4 253,354 + +0.6 253,355 - -0.5 253,355 - -1.5 253,355 - -0.4 253,557 + -0.2 253,557 + -0.2 253,557 + +1.0 253,557 + +1.3 253,557 + -0.7 253,557 + -1.1 253,557 + -0.3 253,557 + -0.3 253,558 - +0.2 253,558 - +0.7 253,558 - +0.7 253,674 + -0.9 253,674 + +0.0 253,674 + +2.3 253,675 - -0.1 253,675 - -0.4 253,896 + GFF4886 0.63 +0.1 253,896 + GFF4886 0.63 +0.8 253,896 + GFF4886 0.63 -0.2 253,969 - GFF4886 0.87 -0.5 253,969 - GFF4886 0.87 +0.7 253,969 - GFF4886 0.87 +1.1 254,004 + -0.3 254,004 + -0.6 254,004 + -0.1 254,004 + +0.6 254,004 + -1.3 254,004 + +0.3 254,005 - -0.7 254,005 - +0.6 254,005 - -1.0 254,005 - -1.3 254,005 - +0.8 254,005 - +0.0 254,005 - +0.1 254,005 - +0.7 254,219 + GFF4887 0.25 -0.5 254,220 - GFF4887 0.25 -0.2 254,220 - GFF4887 0.25 +0.0 254,237 + GFF4887 0.32 -0.1 254,238 - GFF4887 0.32 -0.4 254,238 - GFF4887 0.32 -1.5 254,238 - GFF4887 0.32 -0.5 254,264 + GFF4887 0.41 -0.3 254,265 - GFF4887 0.42 -1.5 254,265 - GFF4887 0.42 -0.3 254,310 + GFF4887 0.58 +0.3 254,310 + GFF4887 0.58 +1.3 254,311 - GFF4887 0.58 -1.1 254,311 - GFF4887 0.58 -0.7 254,311 - GFF4887 0.58 +0.7 254,311 - GFF4887 0.58 -0.3 254,312 + GFF4887 0.58 +1.0 254,312 + GFF4887 0.58 -0.9 254,312 + GFF4887 0.58 -1.5 254,312 + GFF4887 0.58 -0.5 254,312 + GFF4887 0.58 -0.0 254,312 + GFF4887 0.58 +1.6 254,312 + GFF4887 0.58 +0.4 254,312 + GFF4887 0.58 -0.2 254,312 + GFF4887 0.58 -0.2 254,312 + GFF4887 0.58 +0.7 254,312 + GFF4887 0.58 +0.1 254,312 + GFF4887 0.58 -0.3 254,312 + GFF4887 0.58 -0.0 254,312 + GFF4887 0.58 +0.7 254,312 + GFF4887 0.58 -0.2 254,312 + GFF4887 0.58 +0.2 254,312 + GFF4887 0.58 +0.1 254,312 + GFF4887 0.58 -0.1 254,312 + GFF4887 0.58 -0.6 254,312 + GFF4887 0.58 +1.0 254,312 + GFF4887 0.58 -0.0 254,313 - GFF4887 0.59 -0.1 254,313 - GFF4887 0.59 +0.3 254,313 - GFF4887 0.59 +0.2 254,313 - GFF4887 0.59 -1.5 254,313 - GFF4887 0.59 -0.5 254,313 - GFF4887 0.59 +1.0 254,313 - GFF4887 0.59 -0.2 254,313 - GFF4887 0.59 +0.2 254,313 - GFF4887 0.59 -0.2 254,408 + -0.2 254,408 + -0.2 254,408 + +0.3 254,408 + -0.2 254,408 + -0.5 254,408 + -0.3 254,408 + -0.6 254,408 + -1.3 254,408 + +0.6 254,408 + +0.6 254,408 + -1.2 254,408 + +0.6 254,408 + +0.1 254,408 + +0.3 254,408 + +0.2 254,408 + -0.7 254,408 + -0.9 254,408 + -1.1 254,408 + -0.8 254,408 + +0.1 254,408 + +0.3 254,408 + -1.5 254,409 - -0.3 254,409 - +0.1 254,409 - -1.6 254,409 - +0.7 254,409 - -0.3 254,409 - -0.6 254,409 - +0.7 254,409 - +0.3 254,409 - -0.4 254,409 - -0.8 254,409 - +0.2 254,409 - +0.7 254,409 - +1.1 254,409 - +0.0 254,409 - -0.5 254,409 - -0.4 254,531 + GFF4888 0.11 +0.6 254,531 + GFF4888 0.11 -0.6 254,531 + GFF4888 0.11 -1.8 254,532 - GFF4888 0.12 +0.4 254,532 - GFF4888 0.12 -0.2 254,575 + GFF4888 0.24 -0.4 254,576 - GFF4888 0.24 -0.5 254,647 + GFF4888 0.44 +0.0 254,854 + -0.9 254,854 + -1.9 254,854 + -1.5 254,854 + -0.3 254,854 + +0.9 254,854 + -0.2 254,854 + +2.3 254,855 - -0.9 254,855 - -1.4 254,855 - -1.4 254,855 - +0.0 254,855 - -0.8 254,855 - -0.9 254,855 - +0.1 254,855 - +0.3 254,855 - +0.4
Or see this region's nucleotide sequence