Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4866 and GFF4867 are separated by 526 nucleotides GFF4867 and GFF4868 are separated by 47 nucleotides
GFF4866 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 237,885 to 238,667
GFF4866
GFF4867 - Enoyl-CoA hydratase (EC 4.2.1.17), at 239,194 to 239,496
GFF4867
GFF4868 - Type IV secretory pathway, VirD2 components (relaxase), at 239,544 to 241,526
GFF4868
Position (kb) 239
240 Strain fitness (log2 ratio) -2
-1
0
1 at 238.281 kb on + strand, within GFF4866 at 238.283 kb on + strand, within GFF4866 at 238.284 kb on - strand, within GFF4866 at 238.284 kb on - strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.380 kb on + strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.381 kb on - strand, within GFF4866 at 238.484 kb on + strand, within GFF4866 at 238.485 kb on - strand, within GFF4866 at 238.485 kb on - strand, within GFF4866 at 238.485 kb on - strand, within GFF4866 at 238.485 kb on - strand, within GFF4866 at 238.601 kb on + strand at 238.601 kb on + strand at 238.602 kb on - strand at 238.602 kb on - strand at 238.602 kb on - strand at 238.611 kb on + strand at 238.612 kb on - strand at 238.612 kb on - strand at 238.718 kb on - strand at 238.718 kb on - strand at 238.750 kb on + strand at 238.750 kb on + strand at 238.750 kb on + strand at 238.750 kb on + strand at 238.750 kb on + strand at 238.750 kb on + strand at 238.750 kb on + strand at 238.750 kb on + strand at 238.751 kb on - strand at 238.751 kb on - strand at 238.751 kb on - strand at 238.751 kb on - strand at 238.751 kb on - strand at 238.751 kb on - strand at 238.751 kb on - strand at 238.751 kb on - strand at 238.798 kb on + strand at 238.798 kb on + strand at 238.934 kb on + strand at 238.934 kb on + strand at 238.934 kb on + strand at 238.934 kb on + strand at 238.935 kb on - strand at 238.935 kb on - strand at 238.935 kb on - strand at 238.935 kb on - strand at 238.935 kb on - strand at 238.935 kb on - strand at 238.935 kb on - strand at 238.935 kb on - strand at 238.935 kb on - strand at 238.935 kb on - strand at 238.935 kb on - strand at 239.017 kb on + strand at 239.017 kb on + strand at 239.017 kb on + strand at 239.017 kb on + strand at 239.017 kb on + strand at 239.017 kb on + strand at 239.018 kb on - strand at 239.018 kb on - strand at 239.018 kb on - strand at 239.074 kb on + strand at 239.075 kb on - strand at 239.075 kb on - strand at 239.156 kb on + strand at 239.156 kb on + strand at 239.156 kb on + strand at 239.157 kb on - strand at 239.157 kb on - strand at 239.157 kb on - strand at 239.214 kb on - strand at 239.295 kb on + strand, within GFF4867 at 239.332 kb on + strand, within GFF4867 at 239.332 kb on + strand, within GFF4867 at 239.504 kb on + strand at 239.504 kb on + strand at 239.504 kb on + strand at 239.504 kb on + strand at 239.504 kb on + strand at 239.505 kb on - strand at 239.505 kb on - strand at 239.505 kb on - strand at 239.505 kb on - strand at 239.521 kb on + strand at 239.521 kb on + strand at 239.521 kb on + strand at 239.521 kb on + strand at 239.522 kb on - strand at 239.522 kb on - strand at 239.522 kb on - strand at 239.522 kb on - strand at 239.550 kb on - strand at 239.556 kb on + strand at 239.556 kb on + strand at 239.556 kb on + strand at 239.557 kb on - strand at 239.557 kb on - strand at 239.557 kb on - strand at 239.586 kb on + strand at 239.586 kb on + strand at 239.586 kb on + strand at 239.587 kb on - strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.601 kb on + strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.602 kb on - strand at 239.672 kb on + strand at 239.672 kb on + strand at 239.672 kb on + strand at 239.672 kb on + strand at 239.672 kb on + strand at 239.672 kb on + strand at 239.673 kb on - strand at 239.673 kb on - strand at 239.725 kb on + strand at 239.725 kb on + strand at 239.725 kb on + strand at 239.725 kb on + strand at 239.726 kb on - strand at 239.726 kb on - strand at 239.726 kb on - strand at 239.726 kb on - strand at 239.726 kb on - strand at 239.789 kb on + strand, within GFF4868 at 239.789 kb on + strand, within GFF4868 at 239.790 kb on - strand, within GFF4868 at 239.823 kb on + strand, within GFF4868 at 239.823 kb on + strand, within GFF4868 at 239.824 kb on - strand, within GFF4868 at 239.835 kb on + strand, within GFF4868 at 239.835 kb on + strand, within GFF4868 at 239.836 kb on - strand, within GFF4868 at 239.836 kb on - strand, within GFF4868 at 239.836 kb on - strand, within GFF4868 at 239.854 kb on - strand, within GFF4868 at 239.854 kb on - strand, within GFF4868 at 239.854 kb on - strand, within GFF4868 at 240.113 kb on + strand, within GFF4868 at 240.118 kb on - strand, within GFF4868 at 240.118 kb on - strand, within GFF4868 at 240.256 kb on + strand, within GFF4868 at 240.256 kb on + strand, within GFF4868 at 240.257 kb on - strand, within GFF4868 at 240.347 kb on - strand, within GFF4868 at 240.347 kb on - strand, within GFF4868 at 240.382 kb on + strand, within GFF4868 at 240.382 kb on + strand, within GFF4868 at 240.382 kb on + strand, within GFF4868 at 240.382 kb on + strand, within GFF4868 at 240.382 kb on + strand, within GFF4868 at 240.418 kb on + strand, within GFF4868
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 238,281 + GFF4866 0.51 +0.0 238,283 + GFF4866 0.51 -0.8 238,284 - GFF4866 0.51 -0.4 238,284 - GFF4866 0.51 -1.5 238,380 + GFF4866 0.63 -0.7 238,380 + GFF4866 0.63 -0.1 238,380 + GFF4866 0.63 -0.5 238,380 + GFF4866 0.63 -0.2 238,380 + GFF4866 0.63 -0.0 238,380 + GFF4866 0.63 -0.9 238,380 + GFF4866 0.63 +0.4 238,380 + GFF4866 0.63 +0.4 238,380 + GFF4866 0.63 +0.1 238,380 + GFF4866 0.63 -0.2 238,380 + GFF4866 0.63 -1.2 238,380 + GFF4866 0.63 +0.4 238,380 + GFF4866 0.63 -0.4 238,381 - GFF4866 0.63 +1.3 238,381 - GFF4866 0.63 -0.7 238,381 - GFF4866 0.63 -0.9 238,381 - GFF4866 0.63 -0.6 238,381 - GFF4866 0.63 +0.4 238,381 - GFF4866 0.63 -0.4 238,381 - GFF4866 0.63 -1.7 238,381 - GFF4866 0.63 -1.3 238,381 - GFF4866 0.63 -0.5 238,381 - GFF4866 0.63 -0.7 238,381 - GFF4866 0.63 -0.6 238,484 + GFF4866 0.77 +0.6 238,485 - GFF4866 0.77 -0.4 238,485 - GFF4866 0.77 -1.0 238,485 - GFF4866 0.77 -0.1 238,485 - GFF4866 0.77 -0.4 238,601 + -0.3 238,601 + -1.0 238,602 - +1.7 238,602 - -0.9 238,602 - -0.4 238,611 + -1.5 238,612 - -0.2 238,612 - -0.7 238,718 - -1.3 238,718 - +0.1 238,750 + -0.3 238,750 + -0.3 238,750 + -0.4 238,750 + +0.8 238,750 + -1.3 238,750 + -0.7 238,750 + -0.2 238,750 + -0.1 238,751 - -0.6 238,751 - -0.4 238,751 - -1.7 238,751 - -0.9 238,751 - -0.2 238,751 - -0.3 238,751 - +0.1 238,751 - +0.1 238,798 + +0.3 238,798 + +0.1 238,934 + -1.0 238,934 + -0.4 238,934 + +0.7 238,934 + -0.8 238,935 - -0.8 238,935 - -0.0 238,935 - -0.2 238,935 - -0.3 238,935 - -0.7 238,935 - -1.3 238,935 - +1.3 238,935 - -0.5 238,935 - +0.5 238,935 - -0.4 238,935 - +0.9 239,017 + -0.1 239,017 + -0.4 239,017 + -1.0 239,017 + +0.3 239,017 + -0.2 239,017 + -1.9 239,018 - -0.3 239,018 - +0.2 239,018 - -1.7 239,074 + -0.5 239,075 - -0.2 239,075 - -0.2 239,156 + -0.1 239,156 + -0.2 239,156 + -0.0 239,157 - +0.1 239,157 - +0.2 239,157 - +0.7 239,214 - -0.5 239,295 + GFF4867 0.33 +0.2 239,332 + GFF4867 0.46 -0.4 239,332 + GFF4867 0.46 +0.5 239,504 + -0.2 239,504 + -0.6 239,504 + +0.2 239,504 + -0.4 239,504 + -0.1 239,505 - -0.2 239,505 - -0.9 239,505 - +0.1 239,505 - -0.3 239,521 + -0.2 239,521 + +0.2 239,521 + +0.4 239,521 + +0.4 239,522 - +0.8 239,522 - -1.1 239,522 - -0.1 239,522 - -0.2 239,550 - +0.3 239,556 + -0.0 239,556 + -0.1 239,556 + -0.2 239,557 - +0.0 239,557 - -0.7 239,557 - -0.4 239,586 + +0.3 239,586 + +0.3 239,586 + +0.1 239,587 - -0.3 239,601 + -1.1 239,601 + -0.7 239,601 + -0.2 239,601 + -0.9 239,601 + -2.7 239,601 + -1.8 239,601 + -0.4 239,601 + +0.3 239,601 + -0.6 239,601 + +0.2 239,601 + -1.7 239,601 + -1.4 239,601 + +0.3 239,601 + -0.8 239,601 + -0.2 239,601 + -0.3 239,602 - -0.0 239,602 - -0.0 239,602 - -0.4 239,602 - -0.3 239,602 - +1.1 239,602 - -0.3 239,602 - +0.8 239,602 - -0.9 239,602 - -0.4 239,602 - +0.0 239,602 - -0.3 239,602 - -0.2 239,672 + -0.7 239,672 + -0.8 239,672 + -0.3 239,672 + -0.5 239,672 + +0.3 239,672 + -0.2 239,673 - -0.6 239,673 - -1.6 239,725 + +0.1 239,725 + -0.6 239,725 + -0.6 239,725 + -0.3 239,726 - +0.0 239,726 - +0.3 239,726 - -0.7 239,726 - -1.0 239,726 - +0.5 239,789 + GFF4868 0.12 -0.5 239,789 + GFF4868 0.12 -0.2 239,790 - GFF4868 0.12 +0.4 239,823 + GFF4868 0.14 -0.4 239,823 + GFF4868 0.14 -2.2 239,824 - GFF4868 0.14 -0.7 239,835 + GFF4868 0.15 +0.7 239,835 + GFF4868 0.15 +0.2 239,836 - GFF4868 0.15 -1.5 239,836 - GFF4868 0.15 +0.3 239,836 - GFF4868 0.15 -0.2 239,854 - GFF4868 0.16 -0.5 239,854 - GFF4868 0.16 +0.3 239,854 - GFF4868 0.16 -0.6 240,113 + GFF4868 0.29 -0.7 240,118 - GFF4868 0.29 -0.5 240,118 - GFF4868 0.29 +1.7 240,256 + GFF4868 0.36 -0.5 240,256 + GFF4868 0.36 -0.6 240,257 - GFF4868 0.36 -0.3 240,347 - GFF4868 0.40 -0.9 240,347 - GFF4868 0.40 -0.4 240,382 + GFF4868 0.42 +0.7 240,382 + GFF4868 0.42 +0.4 240,382 + GFF4868 0.42 -1.9 240,382 + GFF4868 0.42 -0.2 240,382 + GFF4868 0.42 +0.5 240,418 + GFF4868 0.44 +0.1
Or see this region's nucleotide sequence