Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4814 and GFF4815 are separated by 7 nucleotides GFF4815 and GFF4816 are separated by 54 nucleotides
GFF4814 - Conserved hypothetical protein potentially related to ribose or hydroxymethylpyrimidine metabolism, at 185,104 to 186,291
GFF4814
GFF4815 - Glucose-fructose oxidoreductase (EC 1.1.99.28), at 186,299 to 187,474
GFF4815
GFF4816 - FIG01074109: hypothetical protein, at 187,529 to 188,959
GFF4816
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1 at 185.306 kb on + strand, within GFF4814 at 185.307 kb on - strand, within GFF4814 at 185.514 kb on - strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.534 kb on + strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.535 kb on - strand, within GFF4814 at 185.769 kb on - strand, within GFF4814 at 185.780 kb on + strand, within GFF4814 at 186.243 kb on - strand at 186.405 kb on + strand at 186.468 kb on + strand, within GFF4815 at 186.468 kb on + strand, within GFF4815 at 186.750 kb on + strand, within GFF4815 at 186.750 kb on + strand, within GFF4815 at 186.751 kb on - strand, within GFF4815 at 187.147 kb on - strand, within GFF4815 at 187.534 kb on - strand at 187.669 kb on - strand at 187.737 kb on + strand, within GFF4816 at 187.738 kb on - strand, within GFF4816 at 187.849 kb on - strand, within GFF4816 at 187.849 kb on - strand, within GFF4816 at 187.911 kb on + strand, within GFF4816 at 187.912 kb on - strand, within GFF4816 at 187.912 kb on - strand, within GFF4816 at 188.164 kb on - strand, within GFF4816 at 188.164 kb on - strand, within GFF4816
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 185,306 + GFF4814 0.17 -0.1 185,307 - GFF4814 0.17 -0.1 185,514 - GFF4814 0.35 -0.9 185,534 + GFF4814 0.36 -2.0 185,534 + GFF4814 0.36 -0.2 185,534 + GFF4814 0.36 -0.4 185,534 + GFF4814 0.36 -0.6 185,534 + GFF4814 0.36 -0.5 185,535 - GFF4814 0.36 -0.1 185,535 - GFF4814 0.36 +0.3 185,535 - GFF4814 0.36 -0.8 185,535 - GFF4814 0.36 -0.4 185,769 - GFF4814 0.56 +0.1 185,780 + GFF4814 0.57 -0.2 186,243 - +0.9 186,405 + +1.3 186,468 + GFF4815 0.14 +0.6 186,468 + GFF4815 0.14 -0.1 186,750 + GFF4815 0.38 +0.4 186,750 + GFF4815 0.38 +1.0 186,751 - GFF4815 0.38 -0.1 187,147 - GFF4815 0.72 +0.2 187,534 - -0.0 187,669 - -0.5 187,737 + GFF4816 0.15 -0.3 187,738 - GFF4816 0.15 -1.7 187,849 - GFF4816 0.22 -0.8 187,849 - GFF4816 0.22 -0.1 187,911 + GFF4816 0.27 +0.3 187,912 - GFF4816 0.27 +0.6 187,912 - GFF4816 0.27 +0.1 188,164 - GFF4816 0.44 -0.2 188,164 - GFF4816 0.44 +0.7
Or see this region's nucleotide sequence