Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4706 and GFF4707 overlap by 4 nucleotides GFF4707 and GFF4708 overlap by 20 nucleotides GFF4708 and GFF4709 are separated by 56 nucleotides GFF4709 and GFF4710 are separated by 7 nucleotides
GFF4706 - Na(+) dependent transporter,Sodium Bile acid symporter family, at 70,244 to 71,146
GFF4706
GFF4707 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 71,143 to 72,144
GFF4707
GFF4708 - Transcriptional regulator RSp1267, LysR family, at 72,125 to 73,036
GFF4708
GFF4709 - putative membrane protein, at 73,093 to 73,896
GFF4709
GFF4710 - MutT/Nudix family protein, at 73,904 to 74,380
GFF4710
Position (kb) 72
73
74 Strain fitness (log2 ratio) -1
0
1 at 71.309 kb on - strand, within GFF4707 at 71.525 kb on - strand, within GFF4707 at 71.596 kb on + strand, within GFF4707 at 71.597 kb on - strand, within GFF4707 at 71.845 kb on + strand, within GFF4707 at 71.845 kb on + strand, within GFF4707 at 71.845 kb on + strand, within GFF4707 at 71.845 kb on + strand, within GFF4707 at 71.845 kb on + strand, within GFF4707 at 71.845 kb on + strand, within GFF4707 at 71.845 kb on + strand, within GFF4707 at 71.846 kb on - strand, within GFF4707 at 71.846 kb on - strand, within GFF4707 at 71.846 kb on - strand, within GFF4707 at 71.846 kb on - strand, within GFF4707 at 71.846 kb on - strand, within GFF4707 at 72.053 kb on - strand at 72.053 kb on - strand at 72.053 kb on - strand at 72.053 kb on - strand at 72.142 kb on + strand at 72.143 kb on - strand at 72.143 kb on - strand at 72.143 kb on - strand at 72.143 kb on - strand at 72.143 kb on - strand at 72.333 kb on + strand, within GFF4708 at 73.192 kb on + strand, within GFF4709 at 73.192 kb on + strand, within GFF4709 at 73.192 kb on + strand, within GFF4709 at 73.193 kb on - strand, within GFF4709 at 73.193 kb on - strand, within GFF4709 at 73.193 kb on - strand, within GFF4709 at 73.193 kb on - strand, within GFF4709 at 73.193 kb on - strand, within GFF4709 at 73.265 kb on + strand, within GFF4709 at 73.265 kb on + strand, within GFF4709 at 73.266 kb on - strand, within GFF4709 at 73.266 kb on - strand, within GFF4709 at 73.266 kb on - strand, within GFF4709 at 73.388 kb on + strand, within GFF4709 at 73.388 kb on + strand, within GFF4709 at 73.388 kb on + strand, within GFF4709 at 73.389 kb on + strand, within GFF4709 at 73.389 kb on - strand, within GFF4709 at 73.483 kb on + strand, within GFF4709 at 73.483 kb on + strand, within GFF4709 at 73.483 kb on + strand, within GFF4709 at 73.483 kb on + strand, within GFF4709 at 73.484 kb on - strand, within GFF4709 at 73.618 kb on + strand, within GFF4709 at 73.618 kb on + strand, within GFF4709 at 73.619 kb on - strand, within GFF4709 at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.870 kb on + strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand at 73.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 71,309 - GFF4707 0.17 +0.4 71,525 - GFF4707 0.38 +1.2 71,596 + GFF4707 0.45 -0.3 71,597 - GFF4707 0.45 -1.5 71,845 + GFF4707 0.70 +0.1 71,845 + GFF4707 0.70 -0.9 71,845 + GFF4707 0.70 -0.0 71,845 + GFF4707 0.70 -0.1 71,845 + GFF4707 0.70 -1.4 71,845 + GFF4707 0.70 -1.0 71,845 + GFF4707 0.70 -0.2 71,846 - GFF4707 0.70 -0.7 71,846 - GFF4707 0.70 -0.0 71,846 - GFF4707 0.70 -1.0 71,846 - GFF4707 0.70 -0.1 71,846 - GFF4707 0.70 -0.7 72,053 - +0.4 72,053 - -0.3 72,053 - -0.3 72,053 - -1.0 72,142 + -1.2 72,143 - -0.9 72,143 - +0.2 72,143 - -0.6 72,143 - +1.7 72,143 - -0.1 72,333 + GFF4708 0.23 -1.1 73,192 + GFF4709 0.12 -0.2 73,192 + GFF4709 0.12 +0.2 73,192 + GFF4709 0.12 -1.1 73,193 - GFF4709 0.12 +0.0 73,193 - GFF4709 0.12 +1.3 73,193 - GFF4709 0.12 -0.4 73,193 - GFF4709 0.12 -0.1 73,193 - GFF4709 0.12 -0.5 73,265 + GFF4709 0.21 +0.7 73,265 + GFF4709 0.21 +0.2 73,266 - GFF4709 0.22 +0.1 73,266 - GFF4709 0.22 -0.7 73,266 - GFF4709 0.22 +0.9 73,388 + GFF4709 0.37 -0.3 73,388 + GFF4709 0.37 -0.6 73,388 + GFF4709 0.37 -0.0 73,389 + GFF4709 0.37 +0.1 73,389 - GFF4709 0.37 -1.2 73,483 + GFF4709 0.49 +0.4 73,483 + GFF4709 0.49 +0.1 73,483 + GFF4709 0.49 +0.3 73,483 + GFF4709 0.49 +0.3 73,484 - GFF4709 0.49 -0.4 73,618 + GFF4709 0.65 -1.5 73,618 + GFF4709 0.65 +0.8 73,619 - GFF4709 0.65 -0.7 73,870 + -0.6 73,870 + -0.1 73,870 + -0.3 73,870 + -0.9 73,870 + -0.3 73,870 + -1.7 73,870 + +0.8 73,870 + -0.2 73,870 + +0.3 73,870 + -0.2 73,870 + +0.2 73,870 + -0.4 73,871 - -1.0 73,871 - +1.3 73,871 - +0.2 73,871 - +0.8 73,871 - +0.1 73,871 - -0.2 73,871 - +1.3 73,871 - -0.7 73,871 - -0.5 73,871 - -1.0 73,871 - -0.3 73,871 - -0.3 73,871 - -0.6
Or see this region's nucleotide sequence