Strain Fitness in Variovorax sp. SCN45 around GFF4699

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4698 and GFF4699 are separated by 189 nucleotidesGFF4699 and GFF4700 overlap by 1 nucleotidesGFF4700 and GFF4701 overlap by 4 nucleotides GFF4698 - Transcriptional regulator of various polyols utilization, AraC family, at 61,582 to 62,532 GFF4698 GFF4699 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 62,722 to 64,008 GFF4699 GFF4700 - Various polyols ABC transporter, permease protein 1, at 64,008 to 64,892 GFF4700 GFF4701 - Various polyols ABC transporter, permease protein 2, at 64,889 to 65,731 GFF4701 Position (kb) 62 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 61.732 kb on + strand, within GFF4698at 61.733 kb on - strand, within GFF4698at 61.807 kb on + strand, within GFF4698at 61.807 kb on + strand, within GFF4698at 61.807 kb on + strand, within GFF4698at 61.808 kb on - strand, within GFF4698at 62.188 kb on + strand, within GFF4698at 62.188 kb on + strand, within GFF4698at 62.189 kb on - strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.383 kb on + strand, within GFF4698at 62.384 kb on - strand, within GFF4698at 62.384 kb on - strand, within GFF4698at 62.459 kb on - strandat 62.459 kb on - strandat 62.464 kb on + strandat 62.465 kb on - strandat 62.605 kb on + strandat 62.605 kb on + strandat 62.605 kb on + strandat 62.652 kb on + strandat 62.652 kb on + strandat 62.730 kb on + strandat 62.878 kb on + strand, within GFF4699at 62.878 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.986 kb on + strand, within GFF4699at 62.987 kb on - strand, within GFF4699at 62.987 kb on - strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.995 kb on + strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.996 kb on - strand, within GFF4699at 62.998 kb on + strand, within GFF4699at 62.998 kb on + strand, within GFF4699at 62.998 kb on + strand, within GFF4699at 62.999 kb on - strand, within GFF4699at 62.999 kb on - strand, within GFF4699at 62.999 kb on - strand, within GFF4699at 62.999 kb on - strand, within GFF4699at 62.999 kb on - strand, within GFF4699at 63.061 kb on + strand, within GFF4699at 63.061 kb on + strand, within GFF4699at 63.061 kb on + strand, within GFF4699at 63.061 kb on + strand, within GFF4699at 63.061 kb on + strand, within GFF4699at 63.062 kb on - strand, within GFF4699at 63.062 kb on - strand, within GFF4699at 63.062 kb on - strand, within GFF4699at 63.062 kb on - strand, within GFF4699at 63.062 kb on - strand, within GFF4699at 63.065 kb on - strand, within GFF4699at 63.077 kb on - strand, within GFF4699at 63.077 kb on - strand, within GFF4699at 63.077 kb on - strand, within GFF4699at 63.077 kb on - strand, within GFF4699at 63.082 kb on + strand, within GFF4699at 63.083 kb on - strand, within GFF4699at 63.083 kb on - strand, within GFF4699at 63.083 kb on - strand, within GFF4699at 63.083 kb on - strand, within GFF4699at 63.219 kb on + strand, within GFF4699at 63.219 kb on + strand, within GFF4699at 63.219 kb on + strand, within GFF4699at 63.421 kb on + strand, within GFF4699at 63.421 kb on + strand, within GFF4699at 63.421 kb on + strand, within GFF4699at 63.422 kb on - strand, within GFF4699at 63.422 kb on - strand, within GFF4699at 63.422 kb on - strand, within GFF4699at 63.422 kb on - strand, within GFF4699at 63.440 kb on - strand, within GFF4699at 63.440 kb on - strand, within GFF4699at 63.586 kb on + strand, within GFF4699at 63.802 kb on + strand, within GFF4699at 63.973 kb on + strandat 63.973 kb on + strandat 64.007 kb on - strandat 64.007 kb on - strandat 64.007 kb on - strandat 64.099 kb on + strand, within GFF4700at 64.100 kb on - strand, within GFF4700at 64.182 kb on + strand, within GFF4700at 64.182 kb on + strand, within GFF4700at 64.182 kb on + strand, within GFF4700at 64.183 kb on - strand, within GFF4700at 64.183 kb on - strand, within GFF4700at 64.183 kb on - strand, within GFF4700at 64.291 kb on + strand, within GFF4700at 64.292 kb on - strand, within GFF4700at 64.292 kb on - strand, within GFF4700at 64.292 kb on - strand, within GFF4700at 64.292 kb on - strand, within GFF4700at 64.428 kb on + strand, within GFF4700at 64.429 kb on - strand, within GFF4700at 64.429 kb on - strand, within GFF4700at 64.429 kb on - strand, within GFF4700at 64.429 kb on - strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.435 kb on - strand, within GFF4700at 64.435 kb on - strand, within GFF4700at 64.435 kb on - strand, within GFF4700at 64.435 kb on - strand, within GFF4700at 64.435 kb on - strand, within GFF4700at 64.623 kb on + strand, within GFF4700at 64.623 kb on + strand, within GFF4700at 64.623 kb on + strand, within GFF4700at 64.623 kb on + strand, within GFF4700at 64.623 kb on + strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.629 kb on + strand, within GFF4700at 64.630 kb on - strand, within GFF4700at 64.630 kb on - strand, within GFF4700at 64.630 kb on - strand, within GFF4700at 64.716 kb on + strand, within GFF4700at 64.716 kb on + strand, within GFF4700at 64.716 kb on + strand, within GFF4700at 64.716 kb on + strand, within GFF4700at 64.717 kb on - strand, within GFF4700at 64.717 kb on - strand, within GFF4700at 64.717 kb on - strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.803 kb on - strand, within GFF4700at 64.809 kb on + strandat 64.809 kb on + strandat 64.809 kb on + strandat 64.809 kb on + strandat 64.809 kb on + strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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61,732 + GFF4698 0.16 +2.0
61,733 - GFF4698 0.16 -0.1
61,807 + GFF4698 0.24 -0.0
61,807 + GFF4698 0.24 +0.1
61,807 + GFF4698 0.24 +0.2
61,808 - GFF4698 0.24 +0.6
62,188 + GFF4698 0.64 -0.3
62,188 + GFF4698 0.64 +0.5
62,189 - GFF4698 0.64 -1.3
62,383 + GFF4698 0.84 -2.0
62,383 + GFF4698 0.84 -1.0
62,383 + GFF4698 0.84 -1.5
62,383 + GFF4698 0.84 +0.7
62,383 + GFF4698 0.84 -0.2
62,383 + GFF4698 0.84 -1.0
62,383 + GFF4698 0.84 +0.5
62,384 - GFF4698 0.84 +0.4
62,384 - GFF4698 0.84 -0.7
62,459 - -0.7
62,459 - +0.3
62,464 + +1.3
62,465 - -1.6
62,605 + -0.6
62,605 + +0.1
62,605 + +0.5
62,652 + -0.3
62,652 + -0.3
62,730 + -0.3
62,878 + GFF4699 0.12 +0.3
62,878 + GFF4699 0.12 -0.4
62,986 + GFF4699 0.21 -0.3
62,986 + GFF4699 0.21 -0.4
62,986 + GFF4699 0.21 -2.4
62,986 + GFF4699 0.21 -0.5
62,986 + GFF4699 0.21 -0.6
62,986 + GFF4699 0.21 -1.4
62,987 - GFF4699 0.21 -0.3
62,987 - GFF4699 0.21 +0.3
62,995 + GFF4699 0.21 -0.6
62,995 + GFF4699 0.21 +0.4
62,995 + GFF4699 0.21 +0.6
62,995 + GFF4699 0.21 -1.5
62,995 + GFF4699 0.21 -1.7
62,995 + GFF4699 0.21 -0.2
62,995 + GFF4699 0.21 +1.3
62,995 + GFF4699 0.21 -1.2
62,995 + GFF4699 0.21 -0.2
62,995 + GFF4699 0.21 +1.0
62,996 - GFF4699 0.21 -1.0
62,996 - GFF4699 0.21 +0.9
62,996 - GFF4699 0.21 +1.7
62,996 - GFF4699 0.21 -0.8
62,996 - GFF4699 0.21 -1.3
62,996 - GFF4699 0.21 -1.3
62,996 - GFF4699 0.21 -0.3
62,998 + GFF4699 0.21 -0.3
62,998 + GFF4699 0.21 -1.3
62,998 + GFF4699 0.21 -0.9
62,999 - GFF4699 0.22 -0.3
62,999 - GFF4699 0.22 +0.4
62,999 - GFF4699 0.22 -0.1
62,999 - GFF4699 0.22 +0.2
62,999 - GFF4699 0.22 +0.2
63,061 + GFF4699 0.26 -0.6
63,061 + GFF4699 0.26 +0.4
63,061 + GFF4699 0.26 -0.5
63,061 + GFF4699 0.26 +0.0
63,061 + GFF4699 0.26 +2.6
63,062 - GFF4699 0.26 +0.5
63,062 - GFF4699 0.26 -0.4
63,062 - GFF4699 0.26 -0.1
63,062 - GFF4699 0.26 -0.8
63,062 - GFF4699 0.26 -0.1
63,065 - GFF4699 0.27 +0.3
63,077 - GFF4699 0.28 +0.4
63,077 - GFF4699 0.28 -0.6
63,077 - GFF4699 0.28 +0.3
63,077 - GFF4699 0.28 -1.0
63,082 + GFF4699 0.28 -0.5
63,083 - GFF4699 0.28 -0.2
63,083 - GFF4699 0.28 -0.0
63,083 - GFF4699 0.28 -0.3
63,083 - GFF4699 0.28 +0.4
63,219 + GFF4699 0.39 +0.7
63,219 + GFF4699 0.39 +0.4
63,219 + GFF4699 0.39 -1.8
63,421 + GFF4699 0.54 +0.5
63,421 + GFF4699 0.54 -0.6
63,421 + GFF4699 0.54 -0.4
63,422 - GFF4699 0.54 +0.1
63,422 - GFF4699 0.54 -0.2
63,422 - GFF4699 0.54 -0.5
63,422 - GFF4699 0.54 -0.0
63,440 - GFF4699 0.56 -0.5
63,440 - GFF4699 0.56 -0.4
63,586 + GFF4699 0.67 -0.7
63,802 + GFF4699 0.84 +0.6
63,973 + +0.8
63,973 + -0.1
64,007 - +0.3
64,007 - -1.1
64,007 - -1.2
64,099 + GFF4700 0.10 -0.7
64,100 - GFF4700 0.10 -0.9
64,182 + GFF4700 0.20 -0.2
64,182 + GFF4700 0.20 -0.3
64,182 + GFF4700 0.20 +0.4
64,183 - GFF4700 0.20 -0.6
64,183 - GFF4700 0.20 -0.0
64,183 - GFF4700 0.20 -0.5
64,291 + GFF4700 0.32 -0.5
64,292 - GFF4700 0.32 -0.2
64,292 - GFF4700 0.32 -0.0
64,292 - GFF4700 0.32 -1.0
64,292 - GFF4700 0.32 +1.0
64,428 + GFF4700 0.47 -1.0
64,429 - GFF4700 0.48 +0.3
64,429 - GFF4700 0.48 -2.1
64,429 - GFF4700 0.48 +0.3
64,429 - GFF4700 0.48 -0.1
64,434 + GFF4700 0.48 -1.0
64,434 + GFF4700 0.48 +1.3
64,434 + GFF4700 0.48 -1.9
64,434 + GFF4700 0.48 -0.1
64,434 + GFF4700 0.48 +0.3
64,434 + GFF4700 0.48 -0.3
64,434 + GFF4700 0.48 -0.4
64,434 + GFF4700 0.48 -0.4
64,434 + GFF4700 0.48 -0.8
64,434 + GFF4700 0.48 -0.7
64,435 - GFF4700 0.48 +0.5
64,435 - GFF4700 0.48 +0.5
64,435 - GFF4700 0.48 +0.7
64,435 - GFF4700 0.48 +1.0
64,435 - GFF4700 0.48 -0.2
64,623 + GFF4700 0.69 -0.6
64,623 + GFF4700 0.69 -1.4
64,623 + GFF4700 0.69 -0.9
64,623 + GFF4700 0.69 +1.3
64,623 + GFF4700 0.69 -1.3
64,624 - GFF4700 0.70 -0.3
64,624 - GFF4700 0.70 -0.0
64,624 - GFF4700 0.70 +0.1
64,624 - GFF4700 0.70 -0.5
64,624 - GFF4700 0.70 -1.0
64,624 - GFF4700 0.70 +0.0
64,624 - GFF4700 0.70 +1.3
64,624 - GFF4700 0.70 -0.5
64,629 + GFF4700 0.70 +0.2
64,630 - GFF4700 0.70 -1.7
64,630 - GFF4700 0.70 +0.0
64,630 - GFF4700 0.70 -0.0
64,716 + GFF4700 0.80 -0.0
64,716 + GFF4700 0.80 -1.2
64,716 + GFF4700 0.80 -1.7
64,716 + GFF4700 0.80 -0.2
64,717 - GFF4700 0.80 -1.7
64,717 - GFF4700 0.80 -0.5
64,717 - GFF4700 0.80 -0.5
64,767 + GFF4700 0.86 -0.2
64,767 + GFF4700 0.86 -0.7
64,767 + GFF4700 0.86 +1.7
64,767 + GFF4700 0.86 -0.2
64,767 + GFF4700 0.86 -0.8
64,767 + GFF4700 0.86 +1.3
64,767 + GFF4700 0.86 -0.4
64,767 + GFF4700 0.86 -0.1
64,767 + GFF4700 0.86 -0.1
64,767 + GFF4700 0.86 -0.6
64,767 + GFF4700 0.86 -0.3
64,767 + GFF4700 0.86 -0.1
64,767 + GFF4700 0.86 -0.0
64,768 - GFF4700 0.86 -0.3
64,768 - GFF4700 0.86 -0.1
64,768 - GFF4700 0.86 -0.0
64,768 - GFF4700 0.86 -1.3
64,768 - GFF4700 0.86 -0.7
64,768 - GFF4700 0.86 +0.4
64,768 - GFF4700 0.86 +1.3
64,768 - GFF4700 0.86 +0.8
64,768 - GFF4700 0.86 +1.3
64,768 - GFF4700 0.86 -0.7
64,768 - GFF4700 0.86 -0.2
64,803 - GFF4700 0.90 -0.4
64,809 + -1.7
64,809 + -0.8
64,809 + +1.3
64,809 + -0.9
64,809 + +0.2
64,810 - -0.6
64,810 - +0.5
64,810 - -0.0
64,810 - -0.5
64,810 - -2.0
64,863 + +0.2
64,863 + -0.4
64,863 + -0.3
64,863 + +0.2
64,863 + -0.2
64,863 + -0.1
64,863 + -0.3
64,863 + -1.0
64,863 + +1.9
64,864 - +0.2
64,864 - -1.3
64,864 - +0.3
64,864 - -0.5
64,864 - -0.3
64,864 - -1.2
64,864 - -1.0
64,864 - -0.4
64,864 - -1.0
64,864 - +0.5

Or see this region's nucleotide sequence