Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF465 and GFF466 are separated by 63 nucleotides GFF466 and GFF467 are separated by 32 nucleotides GFF467 and GFF468 are separated by 143 nucleotides
GFF465 - Prolipoprotein diacylglyceryl transferase, at 504,315 to 505,139
GFF465
GFF466 - hypothetical protein, at 505,203 to 505,472
GFF466
GFF467 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 505,505 to 506,278
GFF467
GFF468 - Transcriptional regulator, LysR family, at 506,422 to 507,360
GFF468
Position (kb) 505
506 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 504.230 kb on + strand at 504.237 kb on - strand at 504.296 kb on + strand at 504.296 kb on + strand at 504.296 kb on + strand at 504.296 kb on + strand at 504.296 kb on + strand at 504.296 kb on + strand at 504.297 kb on - strand at 504.297 kb on - strand at 504.297 kb on - strand at 504.297 kb on - strand at 505.258 kb on - strand, within GFF466 at 505.258 kb on - strand, within GFF466 at 505.518 kb on + strand at 505.518 kb on + strand at 505.518 kb on + strand at 505.519 kb on - strand at 505.519 kb on - strand at 505.519 kb on - strand at 505.656 kb on + strand, within GFF467 at 505.656 kb on + strand, within GFF467 at 505.657 kb on - strand, within GFF467 at 505.686 kb on + strand, within GFF467 at 505.687 kb on - strand, within GFF467 at 505.687 kb on - strand, within GFF467 at 505.803 kb on + strand, within GFF467 at 505.803 kb on + strand, within GFF467 at 505.803 kb on + strand, within GFF467 at 505.803 kb on + strand, within GFF467 at 505.812 kb on + strand, within GFF467 at 505.812 kb on + strand, within GFF467 at 505.812 kb on + strand, within GFF467 at 505.812 kb on + strand, within GFF467 at 505.813 kb on - strand, within GFF467 at 505.813 kb on - strand, within GFF467 at 505.813 kb on - strand, within GFF467 at 505.825 kb on - strand, within GFF467 at 505.942 kb on - strand, within GFF467 at 505.942 kb on - strand, within GFF467 at 506.160 kb on + strand, within GFF467 at 506.160 kb on + strand, within GFF467 at 506.161 kb on - strand, within GFF467 at 506.161 kb on - strand, within GFF467 at 506.161 kb on - strand, within GFF467 at 506.161 kb on - strand, within GFF467 at 506.327 kb on + strand at 506.327 kb on + strand at 506.328 kb on - strand at 506.328 kb on - strand at 506.328 kb on - strand at 506.348 kb on + strand at 506.367 kb on + strand at 506.367 kb on + strand at 506.367 kb on + strand at 506.367 kb on + strand at 506.368 kb on - strand at 506.368 kb on - strand at 506.368 kb on - strand at 506.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 504,230 + -0.6 504,237 - +0.1 504,296 + -0.8 504,296 + -0.2 504,296 + -0.4 504,296 + -0.3 504,296 + +0.3 504,296 + -0.5 504,297 - +0.5 504,297 - +0.8 504,297 - +0.5 504,297 - +2.2 505,258 - GFF466 0.20 -0.6 505,258 - GFF466 0.20 -0.9 505,518 + +0.3 505,518 + -0.1 505,518 + +0.2 505,519 - -0.0 505,519 - -0.1 505,519 - +0.5 505,656 + GFF467 0.20 -1.4 505,656 + GFF467 0.20 -0.2 505,657 - GFF467 0.20 -1.6 505,686 + GFF467 0.23 +0.4 505,687 - GFF467 0.24 +0.5 505,687 - GFF467 0.24 -0.1 505,803 + GFF467 0.39 -2.2 505,803 + GFF467 0.39 -0.4 505,803 + GFF467 0.39 -0.0 505,803 + GFF467 0.39 -0.4 505,812 + GFF467 0.40 +0.2 505,812 + GFF467 0.40 +0.8 505,812 + GFF467 0.40 -0.4 505,812 + GFF467 0.40 -1.1 505,813 - GFF467 0.40 -0.7 505,813 - GFF467 0.40 +0.6 505,813 - GFF467 0.40 -0.6 505,825 - GFF467 0.41 -0.8 505,942 - GFF467 0.56 +0.2 505,942 - GFF467 0.56 +3.2 506,160 + GFF467 0.85 -1.4 506,160 + GFF467 0.85 +0.6 506,161 - GFF467 0.85 -0.1 506,161 - GFF467 0.85 -0.8 506,161 - GFF467 0.85 +1.5 506,161 - GFF467 0.85 -0.1 506,327 + +0.4 506,327 + -0.0 506,328 - -0.7 506,328 - +0.2 506,328 - +1.2 506,348 + -2.1 506,367 + +0.6 506,367 + -0.3 506,367 + +0.0 506,367 + -0.5 506,368 - -0.6 506,368 - -0.7 506,368 - -0.0 506,368 - -0.2
Or see this region's nucleotide sequence