Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4557 and GFF4558 overlap by 4 nucleotides GFF4558 and GFF4559 are separated by 3 nucleotides GFF4559 and GFF4560 are separated by 97 nucleotides GFF4560 and GFF4561 are separated by 108 nucleotides
GFF4557 - Dihydroorotase (EC 3.5.2.3), at 193,623 to 194,654
GFF4557
GFF4558 - RNA polymerase ECF-type sigma factor, at 194,651 to 195,193
GFF4558
GFF4559 - Uncharacterized membrane protein Rmet_3714, at 195,197 to 195,406
GFF4559
GFF4560 - hypothetical protein, at 195,504 to 196,235
GFF4560
GFF4561 - Domain often clustered or fused with uracil-DNA glycosylase / Uracil-DNA glycosylase, putative family 6 (EC 3.2.2.27), at 196,344 to 197,867
GFF4561
Position (kb) 195
196
197 Strain fitness (log2 ratio) -2
-1
0
1
2 at 194.688 kb on + strand at 194.689 kb on - strand at 194.814 kb on + strand, within GFF4558 at 194.814 kb on + strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 195.030 kb on + strand, within GFF4558 at 195.088 kb on - strand, within GFF4558 at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.701 kb on - strand, within GFF4560 at 196.130 kb on - strand, within GFF4560 at 196.256 kb on - strand at 196.285 kb on + strand at 196.286 kb on - strand at 196.286 kb on - strand at 196.325 kb on + strand at 196.325 kb on + strand at 196.326 kb on - strand at 196.326 kb on - strand at 196.341 kb on + strand at 196.341 kb on + strand at 196.341 kb on + strand at 196.342 kb on - strand at 196.342 kb on - strand at 196.342 kb on - strand at 196.359 kb on + strand at 196.359 kb on + strand at 196.360 kb on - strand at 196.360 kb on - strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.383 kb on + strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.384 kb on - strand at 196.469 kb on - strand at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.744 kb on + strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.745 kb on - strand, within GFF4561 at 196.774 kb on + strand, within GFF4561 at 196.774 kb on + strand, within GFF4561 at 196.775 kb on - strand, within GFF4561 at 196.775 kb on - strand, within GFF4561 at 196.775 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.158 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.225 kb on - strand, within GFF4561 at 197.225 kb on - strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 194,688 + -0.4 194,689 - +0.1 194,814 + GFF4558 0.30 -1.9 194,814 + GFF4558 0.30 -0.2 194,815 - GFF4558 0.30 -0.9 194,815 - GFF4558 0.30 -0.8 194,815 - GFF4558 0.30 +0.8 194,815 - GFF4558 0.30 -0.4 194,815 - GFF4558 0.30 -0.0 195,030 + GFF4558 0.70 -0.5 195,088 - GFF4558 0.80 +0.1 195,399 + -0.6 195,399 + -0.3 195,399 + -1.8 195,399 + +1.0 195,399 + +0.3 195,399 + +0.1 195,399 + -0.2 195,399 + -0.1 195,399 + -1.0 195,399 + +0.3 195,399 + -0.6 195,399 + -0.8 195,399 + +0.5 195,399 + +0.5 195,399 + -0.6 195,400 - +0.4 195,400 - -0.3 195,400 - +0.9 195,400 - -0.4 195,505 + -0.2 195,505 + +0.3 195,505 + +0.6 195,505 + -0.7 195,505 + +0.4 195,506 - -1.2 195,506 - -0.2 195,506 - -0.8 195,506 - -0.5 195,506 - +1.0 195,506 - -0.6 195,701 - GFF4560 0.27 +0.1 196,130 - GFF4560 0.86 -1.2 196,256 - +1.1 196,285 + -1.3 196,286 - -0.8 196,286 - +0.1 196,325 + +2.2 196,325 + -1.2 196,326 - -1.5 196,326 - +0.1 196,341 + -1.0 196,341 + +0.3 196,341 + -0.4 196,342 - -2.2 196,342 - -0.2 196,342 - +1.6 196,359 + +0.9 196,359 + -0.3 196,360 - -0.5 196,360 - -0.2 196,383 + +0.8 196,383 + +0.2 196,383 + +0.1 196,383 + -1.8 196,383 + -0.3 196,383 + -1.7 196,383 + +0.1 196,384 - -1.5 196,384 - -0.0 196,384 - -1.1 196,384 - -2.3 196,384 - -0.2 196,384 - -0.1 196,469 - -0.1 196,744 + GFF4561 0.26 +0.1 196,744 + GFF4561 0.26 -0.2 196,744 + GFF4561 0.26 -1.2 196,744 + GFF4561 0.26 +0.0 196,744 + GFF4561 0.26 -0.2 196,745 - GFF4561 0.26 -1.2 196,745 - GFF4561 0.26 +0.7 196,745 - GFF4561 0.26 -1.8 196,745 - GFF4561 0.26 -0.1 196,745 - GFF4561 0.26 +0.4 196,745 - GFF4561 0.26 -1.5 196,774 + GFF4561 0.28 +0.6 196,774 + GFF4561 0.28 -0.4 196,775 - GFF4561 0.28 +0.8 196,775 - GFF4561 0.28 -0.5 196,775 - GFF4561 0.28 -0.6 197,053 - GFF4561 0.47 -2.4 197,053 - GFF4561 0.47 -0.2 197,053 - GFF4561 0.47 +0.8 197,158 + GFF4561 0.53 -0.7 197,224 + GFF4561 0.58 +0.2 197,224 + GFF4561 0.58 -0.2 197,224 + GFF4561 0.58 -1.0 197,224 + GFF4561 0.58 -0.7 197,224 + GFF4561 0.58 -0.8 197,225 - GFF4561 0.58 -0.9 197,225 - GFF4561 0.58 -0.6 197,227 + GFF4561 0.58 -0.5 197,227 + GFF4561 0.58 +0.1 197,227 + GFF4561 0.58 -0.1 197,227 + GFF4561 0.58 -0.1 197,227 + GFF4561 0.58 +1.1 197,228 - GFF4561 0.58 -0.9 197,228 - GFF4561 0.58 -0.7 197,228 - GFF4561 0.58 -0.1 197,228 - GFF4561 0.58 -0.7
Or see this region's nucleotide sequence