Strain Fitness in Variovorax sp. SCN45 around GFF4503

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
145,988	-				+0.1
145,988	-				-0.3
146,317	+		GFF4502	0.45	-0.1
146,317	+		GFF4502	0.45	+0.0
146,317	+		GFF4502	0.45	-0.8
146,317	+		GFF4502	0.45	-0.4
146,317	+		GFF4502	0.45	-0.2
146,317	+		GFF4502	0.45	+0.1
146,317	+		GFF4502	0.45	-0.8
146,317	+		GFF4502	0.45	-0.0
146,318	-		GFF4502	0.45	-0.6
146,318	-		GFF4502	0.45	+0.3
146,318	-		GFF4502	0.45	-0.6
146,318	-		GFF4502	0.45	-0.5
146,318	-		GFF4502	0.45	-0.5
146,318	-		GFF4502	0.45	-0.4
146,498	+		GFF4502	0.69	-0.3
146,498	+		GFF4502	0.69	+0.3
146,498	+		GFF4502	0.69	-0.1
146,499	-		GFF4502	0.69	-0.5
146,499	-		GFF4502	0.69	-0.4
146,499	-		GFF4502	0.69	-0.6
146,499	-		GFF4502	0.69	-0.7
146,668	+				-1.3
146,668	+				-0.4
146,669	-				-1.1
146,835	+		GFF4503	0.20	-0.7
146,835	+		GFF4503	0.20	+0.6
146,835	+		GFF4503	0.20	-0.9
146,835	+		GFF4503	0.20	-1.1
146,835	+		GFF4503	0.20	-0.1
146,835	+		GFF4503	0.20	-0.6
146,835	+		GFF4503	0.20	+0.4
146,835	+		GFF4503	0.20	-0.7
146,835	+		GFF4503	0.20	+1.1
146,835	+		GFF4503	0.20	-2.6
146,835	+		GFF4503	0.20	+0.5
146,835	+		GFF4503	0.20	+0.0
146,835	+		GFF4503	0.20	-1.1
146,836	-		GFF4503	0.20	-0.4
146,836	-		GFF4503	0.20	+0.2
146,836	-		GFF4503	0.20	+1.1
146,836	-		GFF4503	0.20	-0.0
146,836	-		GFF4503	0.20	+1.4
146,836	-		GFF4503	0.20	-0.6
146,836	-		GFF4503	0.20	+0.7
146,836	-		GFF4503	0.20	+0.2
146,836	-		GFF4503	0.20	+0.8
146,836	-		GFF4503	0.20	-0.2
146,836	-		GFF4503	0.20	-0.2
146,836	-		GFF4503	0.20	-0.7
146,836	-		GFF4503	0.20	-1.8
146,836	-		GFF4503	0.20	-1.2
146,836	-		GFF4503	0.20	+0.1
146,836	-		GFF4503	0.20	-0.9
146,836	-		GFF4503	0.20	-0.5
146,841	+		GFF4503	0.21	-0.4
146,841	+		GFF4503	0.21	+0.0
146,841	+		GFF4503	0.21	-1.2
146,841	+		GFF4503	0.21	-1.1
146,841	+		GFF4503	0.21	+0.3
146,841	+		GFF4503	0.21	+0.4
146,841	+		GFF4503	0.21	+0.2
146,842	-		GFF4503	0.21	+0.4
146,842	-		GFF4503	0.21	-0.4
146,940	+		GFF4503	0.38	-0.2
146,940	+		GFF4503	0.38	+1.0
146,940	+		GFF4503	0.38	+1.9
146,940	+		GFF4503	0.38	+0.2
146,940	+		GFF4503	0.38	+0.1
146,941	-		GFF4503	0.38	-0.3
146,941	-		GFF4503	0.38	-0.5
146,941	-		GFF4503	0.38	+0.6
146,941	-		GFF4503	0.38	-0.2
146,941	-		GFF4503	0.38	+2.6
146,941	-		GFF4503	0.38	-1.2
146,941	-		GFF4503	0.38	-1.1
147,051	+		GFF4503	0.57	-0.3
147,051	+		GFF4503	0.57	-0.5
147,051	+		GFF4503	0.57	-0.3
147,052	-		GFF4503	0.57	+1.5
147,052	-		GFF4503	0.57	+0.3
147,052	-		GFF4503	0.57	-0.1
147,052	-		GFF4503	0.57	+1.3
147,052	-		GFF4503	0.57	+1.4
147,186	+		GFF4503	0.81	-0.0
147,187	-		GFF4503	0.81	+0.9
147,187	-		GFF4503	0.81	-0.4
147,204	+		GFF4503	0.84	+0.2
147,204	+		GFF4503	0.84	-0.3
147,205	-		GFF4503	0.84	+0.6
147,205	-		GFF4503	0.84	-1.7
147,262	-				-0.2
147,262	-				-1.8
147,306	+				-1.8
147,367	+				+0.2
147,367	+				+0.8
147,367	+				-0.3
147,368	-				-0.8
147,379	+				+0.9
147,379	+				-0.4
147,379	+				-0.9
147,380	-				-0.3
147,380	-				-1.6
147,469	+		GFF4504	0.22	-0.9
147,469	+		GFF4504	0.22	-0.5
147,469	+		GFF4504	0.22	-1.2
147,469	+		GFF4504	0.22	-0.4
147,469	+		GFF4504	0.22	-0.5
147,469	+		GFF4504	0.22	-0.5
147,469	+		GFF4504	0.22	-1.2
147,470	-		GFF4504	0.22	-1.7
147,470	-		GFF4504	0.22	-0.4
147,470	-		GFF4504	0.22	-0.5
147,470	-		GFF4504	0.22	-0.5
147,470	-		GFF4504	0.22	+0.3
147,470	-		GFF4504	0.22	+0.1
147,470	-		GFF4504	0.22	+1.6
147,470	-		GFF4504	0.22	-0.3
147,470	-		GFF4504	0.22	-0.7
147,470	-		GFF4504	0.22	+1.3
147,470	-		GFF4504	0.22	+0.0
147,470	-		GFF4504	0.22	+0.6
147,470	-		GFF4504	0.22	-0.5
147,470	-		GFF4504	0.22	+0.1
147,470	-		GFF4504	0.22	-0.7
147,619	+		GFF4504	0.48	+0.5
147,620	-		GFF4504	0.48	-0.8
147,622	+		GFF4504	0.49	-0.2
147,622	+		GFF4504	0.49	-0.1
147,622	+		GFF4504	0.49	+0.1
147,623	-		GFF4504	0.49	+0.4
147,623	-		GFF4504	0.49	-0.7
147,623	-		GFF4504	0.49	-0.1
147,623	-		GFF4504	0.49	+0.2
147,623	-		GFF4504	0.49	-2.8
147,724	+		GFF4504	0.66	-0.4
147,724	+		GFF4504	0.66	-1.0
147,724	+		GFF4504	0.66	-1.3
147,725	-		GFF4504	0.67	-1.2
147,725	-		GFF4504	0.67	+0.2
147,934	+				+0.2
147,934	+				-0.6
147,934	+				+1.1
147,934	+				-0.2
147,935	-				-2.2
147,935	-				-0.7
147,935	-				-0.2
147,935	-				+1.0
147,935	-				+0.5
147,935	-				-0.1
147,968	+				-0.4
147,968	+				-0.3
147,996	+				+1.6
147,996	+				-0.7
147,996	+				-0.3
147,996	+				+1.4
147,996	+				-0.6
147,996	+				+0.1
147,996	+				-0.3
147,997	-				-0.9
147,997	-				-0.4
147,997	-				-0.9
148,061	+				-0.6
148,061	+				+1.1
148,111	+				-0.1
148,111	+				+0.4
148,111	+				-0.3
148,111	+				-0.7
148,111	+				-0.7
148,112	+				+0.2
148,112	-				-0.2
148,112	-				-0.3
148,112	-				-2.4
148,140	+				-0.1
148,140	+				+0.3
148,140	+				+0.1
148,140	+				-0.5
148,141	-				-0.4
148,141	-				-0.6
148,141	-				+0.4
148,206	+				+0.3
148,207	-				-0.2
148,207	-				+0.1
148,207	-				+0.0
148,267	-				+0.6
148,267	-				-1.2
148,267	-				-0.1
148,267	-				-0.7
148,267	-				-0.6