Strain Fitness in Variovorax sp. SCN45 around GFF4490

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4489 and GFF4490 are separated by 19 nucleotidesGFF4490 and GFF4491 overlap by 26 nucleotidesGFF4491 and GFF4492 overlap by 4 nucleotides GFF4489 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191), at 134,220 to 135,434 GFF4489 GFF4490 - Site-specific tyrosine recombinase XerC, at 135,454 to 136,470 GFF4490 GFF4491 - no description, at 136,445 to 137,080 GFF4491 GFF4492 - Protein of unknown function DUF484, at 137,077 to 137,781 GFF4492 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.755 kb on + strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.839 kb on + strand, within GFF4489at 134.839 kb on + strand, within GFF4489at 134.839 kb on + strand, within GFF4489at 134.840 kb on - strand, within GFF4489at 134.840 kb on - strand, within GFF4489at 134.990 kb on - strand, within GFF4489at 135.091 kb on + strand, within GFF4489at 135.091 kb on + strand, within GFF4489at 135.091 kb on + strand, within GFF4489at 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.452 kb on - strandat 135.452 kb on - strandat 135.452 kb on - strandat 135.452 kb on - strandat 135.455 kb on + strandat 135.455 kb on + strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.461 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.537 kb on + strandat 135.538 kb on - strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.986 kb on + strand, within GFF4490at 135.987 kb on - strand, within GFF4490at 135.987 kb on - strand, within GFF4490at 135.987 kb on - strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.047 kb on - strand, within GFF4490at 136.047 kb on - strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.173 kb on - strand, within GFF4490at 136.334 kb on + strand, within GFF4490at 136.334 kb on + strand, within GFF4490at 136.334 kb on + strand, within GFF4490at 136.554 kb on + strand, within GFF4491at 136.554 kb on + strand, within GFF4491at 136.555 kb on - strand, within GFF4491at 136.555 kb on - strand, within GFF4491at 136.555 kb on - strand, within GFF4491at 136.737 kb on + strand, within GFF4491at 136.737 kb on + strand, within GFF4491at 136.737 kb on + strand, within GFF4491at 136.737 kb on + strand, within GFF4491at 136.902 kb on + strand, within GFF4491at 136.902 kb on + strand, within GFF4491at 136.902 kb on + strand, within GFF4491at 136.902 kb on + strand, within GFF4491at 136.903 kb on - strand, within GFF4491at 136.903 kb on - strand, within GFF4491at 136.903 kb on - strand, within GFF4491at 137.303 kb on + strand, within GFF4492at 137.304 kb on - strand, within GFF4492at 137.360 kb on + strand, within GFF4492at 137.360 kb on + strand, within GFF4492at 137.360 kb on + strand, within GFF4492at 137.360 kb on + strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.361 kb on - strand, within GFF4492at 137.376 kb on - strand, within GFF4492

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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134,464 + GFF4489 0.20 -0.7
134,464 + GFF4489 0.20 +0.4
134,464 + GFF4489 0.20 -0.6
134,464 + GFF4489 0.20 -0.4
134,464 + GFF4489 0.20 -0.5
134,464 + GFF4489 0.20 +0.8
134,464 + GFF4489 0.20 -1.2
134,465 - GFF4489 0.20 +0.6
134,465 - GFF4489 0.20 -0.7
134,465 - GFF4489 0.20 -0.1
134,465 - GFF4489 0.20 -0.3
134,465 - GFF4489 0.20 -0.2
134,604 + GFF4489 0.32 -0.2
134,604 + GFF4489 0.32 -0.4
134,604 + GFF4489 0.32 -0.3
134,604 + GFF4489 0.32 -0.3
134,605 - GFF4489 0.32 +0.1
134,605 - GFF4489 0.32 -0.4
134,605 - GFF4489 0.32 -0.4
134,605 - GFF4489 0.32 -1.2
134,755 + GFF4489 0.44 -0.9
134,756 - GFF4489 0.44 +0.1
134,756 - GFF4489 0.44 +0.3
134,756 - GFF4489 0.44 -0.7
134,756 - GFF4489 0.44 -0.5
134,756 - GFF4489 0.44 +0.2
134,756 - GFF4489 0.44 +0.1
134,756 - GFF4489 0.44 +0.6
134,839 + GFF4489 0.51 -0.8
134,839 + GFF4489 0.51 -0.2
134,839 + GFF4489 0.51 +0.6
134,840 - GFF4489 0.51 -0.9
134,840 - GFF4489 0.51 -0.2
134,990 - GFF4489 0.63 +0.1
135,091 + GFF4489 0.72 -0.3
135,091 + GFF4489 0.72 -0.1
135,091 + GFF4489 0.72 +0.3
135,451 + -0.2
135,451 + -0.5
135,451 + +0.1
135,451 + -0.1
135,451 + -2.3
135,451 + -0.6
135,451 + -0.6
135,451 + +0.1
135,451 + -1.2
135,451 + +0.4
135,451 + +0.1
135,452 - -0.3
135,452 - -0.2
135,452 - +0.5
135,452 - -0.4
135,455 + +0.2
135,455 + -1.6
135,456 - +1.6
135,456 - -1.2
135,456 - -0.0
135,456 - -0.4
135,456 - -0.6
135,456 - -0.4
135,456 - +0.3
135,461 + -1.0
135,503 + -2.2
135,503 + +0.3
135,503 + -0.7
135,503 + -0.9
135,503 + +0.1
135,503 + -3.2
135,503 + -0.9
135,503 + +0.6
135,504 - -0.4
135,504 - +0.3
135,504 - -1.5
135,504 - -0.4
135,504 - -0.2
135,504 - -0.9
135,537 + -1.5
135,538 - -0.1
135,539 + +0.1
135,539 + -1.5
135,539 + +0.1
135,539 + -0.0
135,539 + +0.3
135,540 - -0.0
135,540 - +2.2
135,540 - -0.1
135,540 - +0.6
135,540 - -1.2
135,986 + GFF4490 0.52 +2.6
135,987 - GFF4490 0.52 +1.6
135,987 - GFF4490 0.52 +1.6
135,987 - GFF4490 0.52 +0.6
136,046 + GFF4490 0.58 -1.9
136,046 + GFF4490 0.58 -0.8
136,046 + GFF4490 0.58 -0.4
136,046 + GFF4490 0.58 -0.4
136,046 + GFF4490 0.58 +0.2
136,047 - GFF4490 0.58 +0.6
136,047 - GFF4490 0.58 -0.4
136,172 + GFF4490 0.71 -0.0
136,172 + GFF4490 0.71 -1.2
136,172 + GFF4490 0.71 -0.7
136,172 + GFF4490 0.71 -2.1
136,173 - GFF4490 0.71 +0.1
136,334 + GFF4490 0.87 -0.9
136,334 + GFF4490 0.87 -0.7
136,334 + GFF4490 0.87 +0.6
136,554 + GFF4491 0.17 -2.0
136,554 + GFF4491 0.17 -0.8
136,555 - GFF4491 0.17 -0.9
136,555 - GFF4491 0.17 +1.6
136,555 - GFF4491 0.17 +0.9
136,737 + GFF4491 0.46 -1.8
136,737 + GFF4491 0.46 -0.4
136,737 + GFF4491 0.46 +0.2
136,737 + GFF4491 0.46 -1.1
136,902 + GFF4491 0.72 -0.1
136,902 + GFF4491 0.72 -0.7
136,902 + GFF4491 0.72 -0.4
136,902 + GFF4491 0.72 -1.1
136,903 - GFF4491 0.72 +1.2
136,903 - GFF4491 0.72 -1.1
136,903 - GFF4491 0.72 +0.5
137,303 + GFF4492 0.32 -0.7
137,304 - GFF4492 0.32 -0.4
137,360 + GFF4492 0.40 +0.9
137,360 + GFF4492 0.40 -0.9
137,360 + GFF4492 0.40 -1.0
137,360 + GFF4492 0.40 -0.9
137,361 - GFF4492 0.40 -0.2
137,361 - GFF4492 0.40 +0.1
137,361 - GFF4492 0.40 -0.7
137,361 - GFF4492 0.40 -0.8
137,361 - GFF4492 0.40 +1.1
137,361 - GFF4492 0.40 -0.7
137,361 - GFF4492 0.40 -0.9
137,376 - GFF4492 0.42 -0.2

Or see this region's nucleotide sequence