Strain Fitness in Variovorax sp. SCN45 around GFF4482

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4480 and GFF4481 are separated by 2 nucleotidesGFF4481 and GFF4482 are separated by 8 nucleotidesGFF4482 and GFF4483 are separated by 268 nucleotides GFF4480 - Cell division protein FtsL, at 124,426 to 124,797 GFF4480 GFF4481 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199), at 124,800 to 125,723 GFF4481 GFF4482 - Transcriptional regulator MraZ, at 125,732 to 126,166 GFF4482 GFF4483 - ATP-dependent hsl protease ATP-binding subunit HslU, at 126,435 to 127,763 GFF4483 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1at 125.059 kb on - strand, within GFF4481at 125.800 kb on - strand, within GFF4482at 125.800 kb on - strand, within GFF4482at 125.800 kb on - strand, within GFF4482at 125.800 kb on - strand, within GFF4482at 125.800 kb on - strand, within GFF4482at 125.800 kb on - strand, within GFF4482at 126.253 kb on - strandat 126.253 kb on - strandat 126.253 kb on - strandat 126.253 kb on - strandat 126.253 kb on - strandat 126.253 kb on - strandat 126.290 kb on + strandat 126.291 kb on - strandat 126.299 kb on + strandat 126.367 kb on - strandat 126.367 kb on - strandat 126.367 kb on - strandat 126.371 kb on - strandat 126.371 kb on - strandat 126.471 kb on + strandat 126.471 kb on + strandat 126.471 kb on + strandat 126.471 kb on + strandat 126.471 kb on + strandat 126.471 kb on + strandat 126.472 kb on - strandat 126.472 kb on - strandat 126.472 kb on - strandat 126.472 kb on - strandat 126.472 kb on - strandat 126.472 kb on - strandat 126.472 kb on - strandat 126.472 kb on - strandat 126.472 kb on - strandat 126.496 kb on + strandat 126.496 kb on + strandat 126.496 kb on + strandat 126.496 kb on + strandat 126.497 kb on - strandat 126.497 kb on - strandat 126.497 kb on - strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.549 kb on + strandat 126.550 kb on - strandat 126.550 kb on - strandat 126.550 kb on - strandat 126.550 kb on - strandat 126.550 kb on - strandat 126.550 kb on - strandat 126.550 kb on - strandat 126.550 kb on - strandat 126.550 kb on - strandat 126.550 kb on - strandat 126.550 kb on - strandat 126.703 kb on + strand, within GFF4483at 126.703 kb on + strand, within GFF4483at 126.703 kb on + strand, within GFF4483at 126.703 kb on + strand, within GFF4483at 126.703 kb on + strand, within GFF4483at 126.703 kb on + strand, within GFF4483at 126.703 kb on + strand, within GFF4483at 126.704 kb on - strand, within GFF4483at 126.704 kb on - strand, within GFF4483at 126.704 kb on - strand, within GFF4483at 126.704 kb on - strand, within GFF4483at 126.704 kb on - strand, within GFF4483at 126.704 kb on - strand, within GFF4483at 126.886 kb on + strand, within GFF4483at 126.886 kb on + strand, within GFF4483at 126.886 kb on + strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 126.887 kb on - strand, within GFF4483at 126.887 kb on - strand, within GFF4483

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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125,059 - GFF4481 0.28 -0.4
125,800 - GFF4482 0.16 -1.2
125,800 - GFF4482 0.16 +0.8
125,800 - GFF4482 0.16 -0.9
125,800 - GFF4482 0.16 -0.8
125,800 - GFF4482 0.16 -1.2
125,800 - GFF4482 0.16 -0.3
126,253 - +0.3
126,253 - -1.2
126,253 - +0.6
126,253 - -2.3
126,253 - -0.9
126,253 - +0.1
126,290 + +1.6
126,291 - -0.8
126,299 + -0.7
126,367 - +1.6
126,367 - +1.6
126,367 - +1.3
126,371 - +0.6
126,371 - -0.7
126,471 + -0.1
126,471 + +0.6
126,471 + -0.4
126,471 + +0.2
126,471 + -0.8
126,471 + +0.5
126,472 - -1.0
126,472 - +0.1
126,472 - -0.2
126,472 - -0.8
126,472 - -1.1
126,472 - +0.5
126,472 - -0.8
126,472 - -0.6
126,472 - -0.4
126,496 + +0.1
126,496 + -0.9
126,496 + +0.3
126,496 + -1.4
126,497 - +1.1
126,497 - -0.6
126,497 - -0.2
126,549 + +0.3
126,549 + -0.8
126,549 + +0.6
126,549 + -1.1
126,549 + -1.3
126,549 + +0.1
126,549 + +0.3
126,549 + +0.2
126,549 + -0.9
126,549 + -0.6
126,549 + -0.4
126,549 + -0.4
126,549 + -2.1
126,549 + +0.9
126,549 + -0.3
126,549 + -1.5
126,549 + -0.5
126,549 + -0.3
126,549 + +1.6
126,549 + +0.2
126,549 + +0.6
126,549 + -0.0
126,550 - -2.3
126,550 - -0.2
126,550 - +0.4
126,550 - -0.6
126,550 - -0.3
126,550 - -0.5
126,550 - -0.1
126,550 - -0.1
126,550 - +0.4
126,550 - -1.4
126,550 - -1.0
126,703 + GFF4483 0.20 -0.7
126,703 + GFF4483 0.20 -0.1
126,703 + GFF4483 0.20 +0.1
126,703 + GFF4483 0.20 +0.3
126,703 + GFF4483 0.20 +1.2
126,703 + GFF4483 0.20 +0.4
126,703 + GFF4483 0.20 -0.2
126,704 - GFF4483 0.20 -0.3
126,704 - GFF4483 0.20 +0.9
126,704 - GFF4483 0.20 -0.7
126,704 - GFF4483 0.20 +0.4
126,704 - GFF4483 0.20 -1.0
126,704 - GFF4483 0.20 -0.8
126,886 + GFF4483 0.34 -0.9
126,886 + GFF4483 0.34 +0.6
126,886 + GFF4483 0.34 -1.1
126,887 - GFF4483 0.34 +0.3
126,887 - GFF4483 0.34 -0.5
126,887 - GFF4483 0.34 +0.5
126,887 - GFF4483 0.34 +0.4
126,887 - GFF4483 0.34 +0.3
126,887 - GFF4483 0.34 -0.0

Or see this region's nucleotide sequence