Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4480 and GFF4481 are separated by 2 nucleotides GFF4481 and GFF4482 are separated by 8 nucleotides GFF4482 and GFF4483 are separated by 268 nucleotides
GFF4480 - Cell division protein FtsL, at 124,426 to 124,797
GFF4480
GFF4481 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199), at 124,800 to 125,723
GFF4481
GFF4482 - Transcriptional regulator MraZ, at 125,732 to 126,166
GFF4482
GFF4483 - ATP-dependent hsl protease ATP-binding subunit HslU, at 126,435 to 127,763
GFF4483
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1 at 125.059 kb on - strand, within GFF4481 at 125.800 kb on - strand, within GFF4482 at 125.800 kb on - strand, within GFF4482 at 125.800 kb on - strand, within GFF4482 at 125.800 kb on - strand, within GFF4482 at 125.800 kb on - strand, within GFF4482 at 125.800 kb on - strand, within GFF4482 at 126.253 kb on - strand at 126.253 kb on - strand at 126.253 kb on - strand at 126.253 kb on - strand at 126.253 kb on - strand at 126.253 kb on - strand at 126.290 kb on + strand at 126.291 kb on - strand at 126.299 kb on + strand at 126.367 kb on - strand at 126.367 kb on - strand at 126.367 kb on - strand at 126.371 kb on - strand at 126.371 kb on - strand at 126.471 kb on + strand at 126.471 kb on + strand at 126.471 kb on + strand at 126.471 kb on + strand at 126.471 kb on + strand at 126.471 kb on + strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.472 kb on - strand at 126.496 kb on + strand at 126.496 kb on + strand at 126.496 kb on + strand at 126.496 kb on + strand at 126.497 kb on - strand at 126.497 kb on - strand at 126.497 kb on - strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.549 kb on + strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.550 kb on - strand at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.703 kb on + strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.704 kb on - strand, within GFF4483 at 126.886 kb on + strand, within GFF4483 at 126.886 kb on + strand, within GFF4483 at 126.886 kb on + strand, within GFF4483 at 126.887 kb on - strand, within GFF4483 at 126.887 kb on - strand, within GFF4483 at 126.887 kb on - strand, within GFF4483 at 126.887 kb on - strand, within GFF4483 at 126.887 kb on - strand, within GFF4483 at 126.887 kb on - strand, within GFF4483
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 125,059 - GFF4481 0.28 -0.4 125,800 - GFF4482 0.16 -1.2 125,800 - GFF4482 0.16 +0.8 125,800 - GFF4482 0.16 -0.9 125,800 - GFF4482 0.16 -0.8 125,800 - GFF4482 0.16 -1.2 125,800 - GFF4482 0.16 -0.3 126,253 - +0.3 126,253 - -1.2 126,253 - +0.6 126,253 - -2.3 126,253 - -0.9 126,253 - +0.1 126,290 + +1.6 126,291 - -0.8 126,299 + -0.7 126,367 - +1.6 126,367 - +1.6 126,367 - +1.3 126,371 - +0.6 126,371 - -0.7 126,471 + -0.1 126,471 + +0.6 126,471 + -0.4 126,471 + +0.2 126,471 + -0.8 126,471 + +0.5 126,472 - -1.0 126,472 - +0.1 126,472 - -0.2 126,472 - -0.8 126,472 - -1.1 126,472 - +0.5 126,472 - -0.8 126,472 - -0.6 126,472 - -0.4 126,496 + +0.1 126,496 + -0.9 126,496 + +0.3 126,496 + -1.4 126,497 - +1.1 126,497 - -0.6 126,497 - -0.2 126,549 + +0.3 126,549 + -0.8 126,549 + +0.6 126,549 + -1.1 126,549 + -1.3 126,549 + +0.1 126,549 + +0.3 126,549 + +0.2 126,549 + -0.9 126,549 + -0.6 126,549 + -0.4 126,549 + -0.4 126,549 + -2.1 126,549 + +0.9 126,549 + -0.3 126,549 + -1.5 126,549 + -0.5 126,549 + -0.3 126,549 + +1.6 126,549 + +0.2 126,549 + +0.6 126,549 + -0.0 126,550 - -2.3 126,550 - -0.2 126,550 - +0.4 126,550 - -0.6 126,550 - -0.3 126,550 - -0.5 126,550 - -0.1 126,550 - -0.1 126,550 - +0.4 126,550 - -1.4 126,550 - -1.0 126,703 + GFF4483 0.20 -0.7 126,703 + GFF4483 0.20 -0.1 126,703 + GFF4483 0.20 +0.1 126,703 + GFF4483 0.20 +0.3 126,703 + GFF4483 0.20 +1.2 126,703 + GFF4483 0.20 +0.4 126,703 + GFF4483 0.20 -0.2 126,704 - GFF4483 0.20 -0.3 126,704 - GFF4483 0.20 +0.9 126,704 - GFF4483 0.20 -0.7 126,704 - GFF4483 0.20 +0.4 126,704 - GFF4483 0.20 -1.0 126,704 - GFF4483 0.20 -0.8 126,886 + GFF4483 0.34 -0.9 126,886 + GFF4483 0.34 +0.6 126,886 + GFF4483 0.34 -1.1 126,887 - GFF4483 0.34 +0.3 126,887 - GFF4483 0.34 -0.5 126,887 - GFF4483 0.34 +0.5 126,887 - GFF4483 0.34 +0.4 126,887 - GFF4483 0.34 +0.3 126,887 - GFF4483 0.34 -0.0
Or see this region's nucleotide sequence