Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4463 and GFF4464 are separated by 0 nucleotides GFF4464 and GFF4465 are separated by 48 nucleotides GFF4465 and GFF4466 are separated by 15 nucleotides GFF4466 and GFF4467 are separated by 27 nucleotides
GFF4463 - alpha-methyl-L-serine aldolase, at 104,266 to 105,534
GFF4463
GFF4464 - hypothetical protein, at 105,535 to 105,660
GFF4464
GFF4465 - Transcriptional regulator, LysR family, at 105,709 to 106,665
GFF4465
GFF4466 - Uncharacterized protein Ajs_3662, at 106,681 to 106,857
GFF4466
GFF4467 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108), at 106,885 to 107,817
GFF4467
Position (kb) 105
106
107 Strain fitness (log2 ratio) -1
0
1 at 104.828 kb on + strand, within GFF4463 at 104.828 kb on + strand, within GFF4463 at 104.828 kb on + strand, within GFF4463 at 104.828 kb on + strand, within GFF4463 at 104.829 kb on - strand, within GFF4463 at 104.829 kb on - strand, within GFF4463 at 104.829 kb on - strand, within GFF4463 at 105.062 kb on + strand, within GFF4463 at 105.206 kb on + strand, within GFF4463 at 105.206 kb on + strand, within GFF4463 at 105.207 kb on - strand, within GFF4463 at 105.207 kb on - strand, within GFF4463 at 105.326 kb on + strand, within GFF4463 at 105.326 kb on + strand, within GFF4463 at 105.327 kb on - strand, within GFF4463 at 105.327 kb on - strand, within GFF4463 at 105.327 kb on - strand, within GFF4463 at 105.903 kb on - strand, within GFF4465 at 105.903 kb on - strand, within GFF4465 at 105.903 kb on - strand, within GFF4465 at 105.903 kb on - strand, within GFF4465 at 106.175 kb on - strand, within GFF4465 at 106.453 kb on + strand, within GFF4465 at 106.453 kb on + strand, within GFF4465 at 106.682 kb on + strand at 106.682 kb on + strand at 106.682 kb on + strand at 106.769 kb on + strand, within GFF4466 at 106.770 kb on - strand, within GFF4466 at 106.793 kb on + strand, within GFF4466 at 106.794 kb on - strand, within GFF4466 at 106.794 kb on - strand, within GFF4466 at 106.794 kb on - strand, within GFF4466 at 106.887 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 104,828 + GFF4463 0.44 -0.7 104,828 + GFF4463 0.44 -0.8 104,828 + GFF4463 0.44 -1.5 104,828 + GFF4463 0.44 +0.9 104,829 - GFF4463 0.44 -0.4 104,829 - GFF4463 0.44 -0.4 104,829 - GFF4463 0.44 -0.2 105,062 + GFF4463 0.63 -0.4 105,206 + GFF4463 0.74 -0.3 105,206 + GFF4463 0.74 +0.5 105,207 - GFF4463 0.74 +0.0 105,207 - GFF4463 0.74 -0.4 105,326 + GFF4463 0.84 -0.9 105,326 + GFF4463 0.84 -0.3 105,327 - GFF4463 0.84 +0.3 105,327 - GFF4463 0.84 +0.4 105,327 - GFF4463 0.84 +0.6 105,903 - GFF4465 0.20 +0.0 105,903 - GFF4465 0.20 -0.6 105,903 - GFF4465 0.20 -1.7 105,903 - GFF4465 0.20 +0.1 106,175 - GFF4465 0.49 -0.5 106,453 + GFF4465 0.78 -0.4 106,453 + GFF4465 0.78 -1.4 106,682 + -0.1 106,682 + +0.2 106,682 + -0.5 106,769 + GFF4466 0.50 +0.6 106,770 - GFF4466 0.50 +1.6 106,793 + GFF4466 0.63 +0.2 106,794 - GFF4466 0.64 -1.0 106,794 - GFF4466 0.64 -1.5 106,794 - GFF4466 0.64 -0.1 106,887 - +0.3
Or see this region's nucleotide sequence