Strain Fitness in Variovorax sp. SCN45 around GFF4454

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
93,634	+				+0.1
93,686	+				-0.9
93,697	+				+0.1
93,697	+				-0.2
93,697	+				-0.1
93,697	+				-0.8
93,697	+				-0.6
93,698	-				-0.4
93,698	-				-0.5
93,698	-				-0.2
93,698	-				-0.9
93,732	+				+0.5
93,732	+				-0.4
93,732	+				+0.1
93,732	+				-2.8
93,733	-				-0.4
93,733	-				+0.9
93,733	-				+0.4
93,733	-				-0.4
93,733	-				-0.2
93,733	-				+0.1
93,737	+				-0.3
93,737	+				+0.6
93,738	-				+1.3
93,738	-				-1.1
93,849	+				+0.4
93,849	+				-0.1
93,850	-				-0.3
93,850	-				+1.1
93,933	+				+0.3
93,933	+				-0.9
93,933	+				-0.3
93,933	+				-0.3
93,934	-				+0.3
93,972	+		GFF4453	0.14	-0.3
93,972	+		GFF4453	0.14	+0.8
93,972	+		GFF4453	0.14	+1.6
93,972	+		GFF4453	0.14	-0.4
93,972	+		GFF4453	0.14	+0.5
93,972	+		GFF4453	0.14	-0.5
93,973	-		GFF4453	0.14	-0.4
93,973	-		GFF4453	0.14	+1.6
93,973	-		GFF4453	0.14	-0.1
93,973	-		GFF4453	0.14	-1.1
93,973	-		GFF4453	0.14	-0.5
93,973	-		GFF4453	0.14	-0.2
93,973	-		GFF4453	0.14	+0.6
94,176	+		GFF4453	0.45	+1.6
94,176	+		GFF4453	0.45	-0.4
94,176	+		GFF4453	0.45	+2.0
94,176	+		GFF4453	0.45	-0.0
94,176	+		GFF4453	0.45	-0.7
94,176	+		GFF4453	0.45	-1.6
94,176	+		GFF4453	0.45	-0.0
94,176	+		GFF4453	0.45	+1.0
94,177	-		GFF4453	0.45	-0.2
94,177	-		GFF4453	0.45	-0.1
94,177	-		GFF4453	0.45	+1.6
94,177	-		GFF4453	0.45	-0.0
94,177	-		GFF4453	0.45	-1.8
94,177	-		GFF4453	0.45	-0.3
94,177	-		GFF4453	0.45	+1.5
94,177	-		GFF4453	0.45	-0.5
94,177	-		GFF4453	0.45	-0.7
94,185	+		GFF4453	0.46	-1.7
94,185	+		GFF4453	0.46	-1.1
94,185	+		GFF4453	0.46	-1.3
94,185	+		GFF4453	0.46	-0.4
94,185	+		GFF4453	0.46	-1.2
94,185	+		GFF4453	0.46	-0.7
94,185	+		GFF4453	0.46	-1.2
94,185	+		GFF4453	0.46	+0.4
94,185	+		GFF4453	0.46	+0.0
94,185	+		GFF4453	0.46	-0.4
94,185	+		GFF4453	0.46	-0.7
94,185	+		GFF4453	0.46	-0.2
94,186	-		GFF4453	0.46	-0.5
94,186	-		GFF4453	0.46	-0.1
94,186	-		GFF4453	0.46	-0.1
94,186	-		GFF4453	0.46	-0.4
94,186	-		GFF4453	0.46	+0.8
94,186	-		GFF4453	0.46	-0.4
94,186	-		GFF4453	0.46	+0.1
94,186	-		GFF4453	0.46	+0.2
94,186	-		GFF4453	0.46	-1.5
94,186	-		GFF4453	0.46	-0.8
94,186	-		GFF4453	0.46	-1.5
94,260	+		GFF4453	0.57	-0.8
94,261	-		GFF4453	0.57	+0.4
94,261	-		GFF4453	0.57	-0.5
94,299	+		GFF4453	0.63	+0.2
94,300	-		GFF4453	0.63	+0.4
94,305	+		GFF4453	0.64	-0.4
94,306	-		GFF4453	0.64	-0.2
94,306	-		GFF4453	0.64	+0.3
94,320	+		GFF4453	0.66	-0.2
94,320	+		GFF4453	0.66	-0.9
94,320	+		GFF4453	0.66	+2.1
94,320	+		GFF4453	0.66	-0.1
94,320	+		GFF4453	0.66	+0.3
94,320	+		GFF4453	0.66	-1.1
94,320	+		GFF4453	0.66	-0.7
94,320	+		GFF4453	0.66	-0.8
94,320	+		GFF4453	0.66	-0.6
94,321	-		GFF4453	0.67	+0.5
94,321	-		GFF4453	0.67	+0.5
94,321	-		GFF4453	0.67	-0.9
94,539	+				-0.7
94,539	+				-0.1
94,539	+				-1.1
94,539	+				-1.5
94,540	-				-0.7
94,540	-				-0.9
94,540	-				-0.2
94,540	-				-0.1
94,624	+				+0.1
94,624	+				+0.3
94,624	+				-0.9
94,624	+				+0.4
94,624	+				-2.1
94,624	+				+0.9
94,624	+				-0.1
94,624	+				-0.8
94,625	-				-0.6
94,625	-				-0.5
94,625	-				-1.3
94,632	+				+0.3
94,632	+				-1.7
94,632	+				-0.8
94,632	+				-1.4
94,633	-				-0.8
94,633	-				-0.6
94,633	-				-0.8
94,633	-				+0.6
94,633	-				-2.8
94,656	-				-0.9
94,883	+		GFF4454	0.13	+0.9
94,883	+		GFF4454	0.13	+0.1
94,952	+		GFF4454	0.16	-0.4
94,953	-		GFF4454	0.16	+0.1
94,953	-		GFF4454	0.16	-1.9
95,117	+		GFF4454	0.24	-0.7
95,117	+		GFF4454	0.24	+1.6
95,118	-		GFF4454	0.24	-0.8
95,118	-		GFF4454	0.24	-1.2
95,156	+		GFF4454	0.26	+1.1
95,157	-		GFF4454	0.26	-1.1
95,157	-		GFF4454	0.26	-1.2
95,240	+		GFF4454	0.30	+0.1
95,522	+		GFF4454	0.44	-0.7
95,522	+		GFF4454	0.44	-0.4
95,522	+		GFF4454	0.44	-0.8
95,522	+		GFF4454	0.44	+0.6
95,522	+		GFF4454	0.44	-0.7
95,522	+		GFF4454	0.44	+1.4
95,522	+		GFF4454	0.44	-0.3
95,523	-		GFF4454	0.44	-0.2
95,523	-		GFF4454	0.44	-0.4
95,523	-		GFF4454	0.44	-0.4
95,535	-		GFF4454	0.44	-1.2
95,573	+		GFF4454	0.46	+0.2
95,573	+		GFF4454	0.46	-0.8
95,574	-		GFF4454	0.46	-0.2
95,616	-		GFF4454	0.48	-1.8
95,886	-		GFF4454	0.61	-0.7
95,886	-		GFF4454	0.61	-0.8
96,143	+		GFF4454	0.74	+0.6
96,143	+		GFF4454	0.74	+0.2
96,143	+		GFF4454	0.74	-2.3
96,143	+		GFF4454	0.74	-0.9
96,143	+		GFF4454	0.74	+0.6
96,144	-		GFF4454	0.74	-1.7
96,144	-		GFF4454	0.74	-0.9
96,144	-		GFF4454	0.74	-0.9
96,175	+		GFF4454	0.75	-1.9
96,302	+		GFF4454	0.81	-2.7
96,303	-		GFF4454	0.82	+0.6
96,303	-		GFF4454	0.82	-0.4
96,311	+		GFF4454	0.82	+1.1
96,312	-		GFF4454	0.82	+0.1
96,312	-		GFF4454	0.82	+0.1
96,312	-		GFF4454	0.82	-0.4
96,357	-		GFF4454	0.84	-2.1
96,357	-		GFF4454	0.84	-1.4
96,721	+				-0.5
96,721	+				+0.8
96,721	+				-0.5
97,231	+		GFF4455	0.59	-1.1
97,231	+		GFF4455	0.59	-0.8
97,231	+		GFF4455	0.59	-0.1
97,231	+		GFF4455	0.59	-0.1
97,232	-		GFF4455	0.59	-0.5
97,270	+		GFF4455	0.64	+0.1
97,271	-		GFF4455	0.64	+1.1
97,271	-		GFF4455	0.64	-0.1
97,271	-		GFF4455	0.64	-0.2
97,345	+		GFF4455	0.72	-0.4
97,345	+		GFF4455	0.72	-2.7
97,346	-		GFF4455	0.72	-0.7
97,346	-		GFF4455	0.72	+0.9
97,346	-		GFF4455	0.72	-0.7
97,607	+				+0.3
97,607	+				-0.2
97,607	+				+0.5
97,608	-				-0.4
97,608	-				-1.0
97,608	-				+0.1
97,608	-				+0.3