Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4453 and GFF4454 are separated by 83 nucleotides GFF4454 and GFF4455 are separated by 44 nucleotides GFF4455 and GFF4456 are separated by 16 nucleotides
GFF4453 - Esterase YqiA, at 93,882 to 94,541
GFF4453
GFF4454 - Exoribonuclease II (EC 3.1.13.1), at 94,625 to 96,682
GFF4454
GFF4455 - TonB protein, at 96,727 to 97,581
GFF4455
GFF4456 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 97,598 to 98,470
GFF4456
Position (kb)
94
95
96
97 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 93.634 kb on + strand at 93.686 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.698 kb on - strand at 93.698 kb on - strand at 93.698 kb on - strand at 93.698 kb on - strand at 93.732 kb on + strand at 93.732 kb on + strand at 93.732 kb on + strand at 93.732 kb on + strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.737 kb on + strand at 93.737 kb on + strand at 93.738 kb on - strand at 93.738 kb on - strand at 93.849 kb on + strand at 93.849 kb on + strand at 93.850 kb on - strand at 93.850 kb on - strand at 93.933 kb on + strand at 93.933 kb on + strand at 93.933 kb on + strand at 93.933 kb on + strand at 93.934 kb on - strand at 93.972 kb on + strand, within GFF4453 at 93.972 kb on + strand, within GFF4453 at 93.972 kb on + strand, within GFF4453 at 93.972 kb on + strand, within GFF4453 at 93.972 kb on + strand, within GFF4453 at 93.972 kb on + strand, within GFF4453 at 93.973 kb on - strand, within GFF4453 at 93.973 kb on - strand, within GFF4453 at 93.973 kb on - strand, within GFF4453 at 93.973 kb on - strand, within GFF4453 at 93.973 kb on - strand, within GFF4453 at 93.973 kb on - strand, within GFF4453 at 93.973 kb on - strand, within GFF4453 at 94.176 kb on + strand, within GFF4453 at 94.176 kb on + strand, within GFF4453 at 94.176 kb on + strand, within GFF4453 at 94.176 kb on + strand, within GFF4453 at 94.176 kb on + strand, within GFF4453 at 94.176 kb on + strand, within GFF4453 at 94.176 kb on + strand, within GFF4453 at 94.176 kb on + strand, within GFF4453 at 94.177 kb on - strand, within GFF4453 at 94.177 kb on - strand, within GFF4453 at 94.177 kb on - strand, within GFF4453 at 94.177 kb on - strand, within GFF4453 at 94.177 kb on - strand, within GFF4453 at 94.177 kb on - strand, within GFF4453 at 94.177 kb on - strand, within GFF4453 at 94.177 kb on - strand, within GFF4453 at 94.177 kb on - strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.185 kb on + strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.186 kb on - strand, within GFF4453 at 94.260 kb on + strand, within GFF4453 at 94.261 kb on - strand, within GFF4453 at 94.261 kb on - strand, within GFF4453 at 94.299 kb on + strand, within GFF4453 at 94.300 kb on - strand, within GFF4453 at 94.305 kb on + strand, within GFF4453 at 94.306 kb on - strand, within GFF4453 at 94.306 kb on - strand, within GFF4453 at 94.320 kb on + strand, within GFF4453 at 94.320 kb on + strand, within GFF4453 at 94.320 kb on + strand, within GFF4453 at 94.320 kb on + strand, within GFF4453 at 94.320 kb on + strand, within GFF4453 at 94.320 kb on + strand, within GFF4453 at 94.320 kb on + strand, within GFF4453 at 94.320 kb on + strand, within GFF4453 at 94.320 kb on + strand, within GFF4453 at 94.321 kb on - strand, within GFF4453 at 94.321 kb on - strand, within GFF4453 at 94.321 kb on - strand, within GFF4453 at 94.539 kb on + strand at 94.539 kb on + strand at 94.539 kb on + strand at 94.539 kb on + strand at 94.540 kb on - strand at 94.540 kb on - strand at 94.540 kb on - strand at 94.540 kb on - strand at 94.624 kb on + strand at 94.624 kb on + strand at 94.624 kb on + strand at 94.624 kb on + strand at 94.624 kb on + strand at 94.624 kb on + strand at 94.624 kb on + strand at 94.624 kb on + strand at 94.625 kb on - strand at 94.625 kb on - strand at 94.625 kb on - strand at 94.632 kb on + strand at 94.632 kb on + strand at 94.632 kb on + strand at 94.632 kb on + strand at 94.633 kb on - strand at 94.633 kb on - strand at 94.633 kb on - strand at 94.633 kb on - strand at 94.633 kb on - strand at 94.656 kb on - strand at 94.883 kb on + strand, within GFF4454 at 94.883 kb on + strand, within GFF4454 at 94.952 kb on + strand, within GFF4454 at 94.953 kb on - strand, within GFF4454 at 94.953 kb on - strand, within GFF4454 at 95.117 kb on + strand, within GFF4454 at 95.117 kb on + strand, within GFF4454 at 95.118 kb on - strand, within GFF4454 at 95.118 kb on - strand, within GFF4454 at 95.156 kb on + strand, within GFF4454 at 95.157 kb on - strand, within GFF4454 at 95.157 kb on - strand, within GFF4454 at 95.240 kb on + strand, within GFF4454 at 95.522 kb on + strand, within GFF4454 at 95.522 kb on + strand, within GFF4454 at 95.522 kb on + strand, within GFF4454 at 95.522 kb on + strand, within GFF4454 at 95.522 kb on + strand, within GFF4454 at 95.522 kb on + strand, within GFF4454 at 95.522 kb on + strand, within GFF4454 at 95.523 kb on - strand, within GFF4454 at 95.523 kb on - strand, within GFF4454 at 95.523 kb on - strand, within GFF4454 at 95.535 kb on - strand, within GFF4454 at 95.573 kb on + strand, within GFF4454 at 95.573 kb on + strand, within GFF4454 at 95.574 kb on - strand, within GFF4454 at 95.616 kb on - strand, within GFF4454 at 95.886 kb on - strand, within GFF4454 at 95.886 kb on - strand, within GFF4454 at 96.143 kb on + strand, within GFF4454 at 96.143 kb on + strand, within GFF4454 at 96.143 kb on + strand, within GFF4454 at 96.143 kb on + strand, within GFF4454 at 96.143 kb on + strand, within GFF4454 at 96.144 kb on - strand, within GFF4454 at 96.144 kb on - strand, within GFF4454 at 96.144 kb on - strand, within GFF4454 at 96.175 kb on + strand, within GFF4454 at 96.302 kb on + strand, within GFF4454 at 96.303 kb on - strand, within GFF4454 at 96.303 kb on - strand, within GFF4454 at 96.311 kb on + strand, within GFF4454 at 96.312 kb on - strand, within GFF4454 at 96.312 kb on - strand, within GFF4454 at 96.312 kb on - strand, within GFF4454 at 96.357 kb on - strand, within GFF4454 at 96.357 kb on - strand, within GFF4454 at 96.721 kb on + strand at 96.721 kb on + strand at 96.721 kb on + strand at 97.231 kb on + strand, within GFF4455 at 97.231 kb on + strand, within GFF4455 at 97.231 kb on + strand, within GFF4455 at 97.231 kb on + strand, within GFF4455 at 97.232 kb on - strand, within GFF4455 at 97.270 kb on + strand, within GFF4455 at 97.271 kb on - strand, within GFF4455 at 97.271 kb on - strand, within GFF4455 at 97.271 kb on - strand, within GFF4455 at 97.345 kb on + strand, within GFF4455 at 97.345 kb on + strand, within GFF4455 at 97.346 kb on - strand, within GFF4455 at 97.346 kb on - strand, within GFF4455 at 97.346 kb on - strand, within GFF4455 at 97.607 kb on + strand at 97.607 kb on + strand at 97.607 kb on + strand at 97.608 kb on - strand at 97.608 kb on - strand at 97.608 kb on - strand at 97.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 93,634 + +0.1 93,686 + -0.9 93,697 + +0.1 93,697 + -0.2 93,697 + -0.1 93,697 + -0.8 93,697 + -0.6 93,698 - -0.4 93,698 - -0.5 93,698 - -0.2 93,698 - -0.9 93,732 + +0.5 93,732 + -0.4 93,732 + +0.1 93,732 + -2.8 93,733 - -0.4 93,733 - +0.9 93,733 - +0.4 93,733 - -0.4 93,733 - -0.2 93,733 - +0.1 93,737 + -0.3 93,737 + +0.6 93,738 - +1.3 93,738 - -1.1 93,849 + +0.4 93,849 + -0.1 93,850 - -0.3 93,850 - +1.1 93,933 + +0.3 93,933 + -0.9 93,933 + -0.3 93,933 + -0.3 93,934 - +0.3 93,972 + GFF4453 0.14 -0.3 93,972 + GFF4453 0.14 +0.8 93,972 + GFF4453 0.14 +1.6 93,972 + GFF4453 0.14 -0.4 93,972 + GFF4453 0.14 +0.5 93,972 + GFF4453 0.14 -0.5 93,973 - GFF4453 0.14 -0.4 93,973 - GFF4453 0.14 +1.6 93,973 - GFF4453 0.14 -0.1 93,973 - GFF4453 0.14 -1.1 93,973 - GFF4453 0.14 -0.5 93,973 - GFF4453 0.14 -0.2 93,973 - GFF4453 0.14 +0.6 94,176 + GFF4453 0.45 +1.6 94,176 + GFF4453 0.45 -0.4 94,176 + GFF4453 0.45 +2.0 94,176 + GFF4453 0.45 -0.0 94,176 + GFF4453 0.45 -0.7 94,176 + GFF4453 0.45 -1.6 94,176 + GFF4453 0.45 -0.0 94,176 + GFF4453 0.45 +1.0 94,177 - GFF4453 0.45 -0.2 94,177 - GFF4453 0.45 -0.1 94,177 - GFF4453 0.45 +1.6 94,177 - GFF4453 0.45 -0.0 94,177 - GFF4453 0.45 -1.8 94,177 - GFF4453 0.45 -0.3 94,177 - GFF4453 0.45 +1.5 94,177 - GFF4453 0.45 -0.5 94,177 - GFF4453 0.45 -0.7 94,185 + GFF4453 0.46 -1.7 94,185 + GFF4453 0.46 -1.1 94,185 + GFF4453 0.46 -1.3 94,185 + GFF4453 0.46 -0.4 94,185 + GFF4453 0.46 -1.2 94,185 + GFF4453 0.46 -0.7 94,185 + GFF4453 0.46 -1.2 94,185 + GFF4453 0.46 +0.4 94,185 + GFF4453 0.46 +0.0 94,185 + GFF4453 0.46 -0.4 94,185 + GFF4453 0.46 -0.7 94,185 + GFF4453 0.46 -0.2 94,186 - GFF4453 0.46 -0.5 94,186 - GFF4453 0.46 -0.1 94,186 - GFF4453 0.46 -0.1 94,186 - GFF4453 0.46 -0.4 94,186 - GFF4453 0.46 +0.8 94,186 - GFF4453 0.46 -0.4 94,186 - GFF4453 0.46 +0.1 94,186 - GFF4453 0.46 +0.2 94,186 - GFF4453 0.46 -1.5 94,186 - GFF4453 0.46 -0.8 94,186 - GFF4453 0.46 -1.5 94,260 + GFF4453 0.57 -0.8 94,261 - GFF4453 0.57 +0.4 94,261 - GFF4453 0.57 -0.5 94,299 + GFF4453 0.63 +0.2 94,300 - GFF4453 0.63 +0.4 94,305 + GFF4453 0.64 -0.4 94,306 - GFF4453 0.64 -0.2 94,306 - GFF4453 0.64 +0.3 94,320 + GFF4453 0.66 -0.2 94,320 + GFF4453 0.66 -0.9 94,320 + GFF4453 0.66 +2.1 94,320 + GFF4453 0.66 -0.1 94,320 + GFF4453 0.66 +0.3 94,320 + GFF4453 0.66 -1.1 94,320 + GFF4453 0.66 -0.7 94,320 + GFF4453 0.66 -0.8 94,320 + GFF4453 0.66 -0.6 94,321 - GFF4453 0.67 +0.5 94,321 - GFF4453 0.67 +0.5 94,321 - GFF4453 0.67 -0.9 94,539 + -0.7 94,539 + -0.1 94,539 + -1.1 94,539 + -1.5 94,540 - -0.7 94,540 - -0.9 94,540 - -0.2 94,540 - -0.1 94,624 + +0.1 94,624 + +0.3 94,624 + -0.9 94,624 + +0.4 94,624 + -2.1 94,624 + +0.9 94,624 + -0.1 94,624 + -0.8 94,625 - -0.6 94,625 - -0.5 94,625 - -1.3 94,632 + +0.3 94,632 + -1.7 94,632 + -0.8 94,632 + -1.4 94,633 - -0.8 94,633 - -0.6 94,633 - -0.8 94,633 - +0.6 94,633 - -2.8 94,656 - -0.9 94,883 + GFF4454 0.13 +0.9 94,883 + GFF4454 0.13 +0.1 94,952 + GFF4454 0.16 -0.4 94,953 - GFF4454 0.16 +0.1 94,953 - GFF4454 0.16 -1.9 95,117 + GFF4454 0.24 -0.7 95,117 + GFF4454 0.24 +1.6 95,118 - GFF4454 0.24 -0.8 95,118 - GFF4454 0.24 -1.2 95,156 + GFF4454 0.26 +1.1 95,157 - GFF4454 0.26 -1.1 95,157 - GFF4454 0.26 -1.2 95,240 + GFF4454 0.30 +0.1 95,522 + GFF4454 0.44 -0.7 95,522 + GFF4454 0.44 -0.4 95,522 + GFF4454 0.44 -0.8 95,522 + GFF4454 0.44 +0.6 95,522 + GFF4454 0.44 -0.7 95,522 + GFF4454 0.44 +1.4 95,522 + GFF4454 0.44 -0.3 95,523 - GFF4454 0.44 -0.2 95,523 - GFF4454 0.44 -0.4 95,523 - GFF4454 0.44 -0.4 95,535 - GFF4454 0.44 -1.2 95,573 + GFF4454 0.46 +0.2 95,573 + GFF4454 0.46 -0.8 95,574 - GFF4454 0.46 -0.2 95,616 - GFF4454 0.48 -1.8 95,886 - GFF4454 0.61 -0.7 95,886 - GFF4454 0.61 -0.8 96,143 + GFF4454 0.74 +0.6 96,143 + GFF4454 0.74 +0.2 96,143 + GFF4454 0.74 -2.3 96,143 + GFF4454 0.74 -0.9 96,143 + GFF4454 0.74 +0.6 96,144 - GFF4454 0.74 -1.7 96,144 - GFF4454 0.74 -0.9 96,144 - GFF4454 0.74 -0.9 96,175 + GFF4454 0.75 -1.9 96,302 + GFF4454 0.81 -2.7 96,303 - GFF4454 0.82 +0.6 96,303 - GFF4454 0.82 -0.4 96,311 + GFF4454 0.82 +1.1 96,312 - GFF4454 0.82 +0.1 96,312 - GFF4454 0.82 +0.1 96,312 - GFF4454 0.82 -0.4 96,357 - GFF4454 0.84 -2.1 96,357 - GFF4454 0.84 -1.4 96,721 + -0.5 96,721 + +0.8 96,721 + -0.5 97,231 + GFF4455 0.59 -1.1 97,231 + GFF4455 0.59 -0.8 97,231 + GFF4455 0.59 -0.1 97,231 + GFF4455 0.59 -0.1 97,232 - GFF4455 0.59 -0.5 97,270 + GFF4455 0.64 +0.1 97,271 - GFF4455 0.64 +1.1 97,271 - GFF4455 0.64 -0.1 97,271 - GFF4455 0.64 -0.2 97,345 + GFF4455 0.72 -0.4 97,345 + GFF4455 0.72 -2.7 97,346 - GFF4455 0.72 -0.7 97,346 - GFF4455 0.72 +0.9 97,346 - GFF4455 0.72 -0.7 97,607 + +0.3 97,607 + -0.2 97,607 + +0.5 97,608 - -0.4 97,608 - -1.0 97,608 - +0.1 97,608 - +0.3
Or see this region's nucleotide sequence