Strain Fitness in Variovorax sp. SCN45 around GFF4454

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4453 and GFF4454 are separated by 83 nucleotidesGFF4454 and GFF4455 are separated by 44 nucleotidesGFF4455 and GFF4456 are separated by 16 nucleotides GFF4453 - Esterase YqiA, at 93,882 to 94,541 GFF4453 GFF4454 - Exoribonuclease II (EC 3.1.13.1), at 94,625 to 96,682 GFF4454 GFF4455 - TonB protein, at 96,727 to 97,581 GFF4455 GFF4456 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 97,598 to 98,470 GFF4456 Position (kb) 94 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 93.634 kb on + strandat 93.686 kb on + strandat 93.697 kb on + strandat 93.697 kb on + strandat 93.697 kb on + strandat 93.697 kb on + strandat 93.697 kb on + strandat 93.698 kb on - strandat 93.698 kb on - strandat 93.698 kb on - strandat 93.698 kb on - strandat 93.732 kb on + strandat 93.732 kb on + strandat 93.732 kb on + strandat 93.732 kb on + strandat 93.733 kb on - strandat 93.733 kb on - strandat 93.733 kb on - strandat 93.733 kb on - strandat 93.733 kb on - strandat 93.733 kb on - strandat 93.737 kb on + strandat 93.737 kb on + strandat 93.738 kb on - strandat 93.738 kb on - strandat 93.849 kb on + strandat 93.849 kb on + strandat 93.850 kb on - strandat 93.850 kb on - strandat 93.933 kb on + strandat 93.933 kb on + strandat 93.933 kb on + strandat 93.933 kb on + strandat 93.934 kb on - strandat 93.972 kb on + strand, within GFF4453at 93.972 kb on + strand, within GFF4453at 93.972 kb on + strand, within GFF4453at 93.972 kb on + strand, within GFF4453at 93.972 kb on + strand, within GFF4453at 93.972 kb on + strand, within GFF4453at 93.973 kb on - strand, within GFF4453at 93.973 kb on - strand, within GFF4453at 93.973 kb on - strand, within GFF4453at 93.973 kb on - strand, within GFF4453at 93.973 kb on - strand, within GFF4453at 93.973 kb on - strand, within GFF4453at 93.973 kb on - strand, within GFF4453at 94.176 kb on + strand, within GFF4453at 94.176 kb on + strand, within GFF4453at 94.176 kb on + strand, within GFF4453at 94.176 kb on + strand, within GFF4453at 94.176 kb on + strand, within GFF4453at 94.176 kb on + strand, within GFF4453at 94.176 kb on + strand, within GFF4453at 94.176 kb on + strand, within GFF4453at 94.177 kb on - strand, within GFF4453at 94.177 kb on - strand, within GFF4453at 94.177 kb on - strand, within GFF4453at 94.177 kb on - strand, within GFF4453at 94.177 kb on - strand, within GFF4453at 94.177 kb on - strand, within GFF4453at 94.177 kb on - strand, within GFF4453at 94.177 kb on - strand, within GFF4453at 94.177 kb on - strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.185 kb on + strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.186 kb on - strand, within GFF4453at 94.260 kb on + strand, within GFF4453at 94.261 kb on - strand, within GFF4453at 94.261 kb on - strand, within GFF4453at 94.299 kb on + strand, within GFF4453at 94.300 kb on - strand, within GFF4453at 94.305 kb on + strand, within GFF4453at 94.306 kb on - strand, within GFF4453at 94.306 kb on - strand, within GFF4453at 94.320 kb on + strand, within GFF4453at 94.320 kb on + strand, within GFF4453at 94.320 kb on + strand, within GFF4453at 94.320 kb on + strand, within GFF4453at 94.320 kb on + strand, within GFF4453at 94.320 kb on + strand, within GFF4453at 94.320 kb on + strand, within GFF4453at 94.320 kb on + strand, within GFF4453at 94.320 kb on + strand, within GFF4453at 94.321 kb on - strand, within GFF4453at 94.321 kb on - strand, within GFF4453at 94.321 kb on - strand, within GFF4453at 94.539 kb on + strandat 94.539 kb on + strandat 94.539 kb on + strandat 94.539 kb on + strandat 94.540 kb on - strandat 94.540 kb on - strandat 94.540 kb on - strandat 94.540 kb on - strandat 94.624 kb on + strandat 94.624 kb on + strandat 94.624 kb on + strandat 94.624 kb on + strandat 94.624 kb on + strandat 94.624 kb on + strandat 94.624 kb on + strandat 94.624 kb on + strandat 94.625 kb on - strandat 94.625 kb on - strandat 94.625 kb on - strandat 94.632 kb on + strandat 94.632 kb on + strandat 94.632 kb on + strandat 94.632 kb on + strandat 94.633 kb on - strandat 94.633 kb on - strandat 94.633 kb on - strandat 94.633 kb on - strandat 94.633 kb on - strandat 94.656 kb on - strandat 94.883 kb on + strand, within GFF4454at 94.883 kb on + strand, within GFF4454at 94.952 kb on + strand, within GFF4454at 94.953 kb on - strand, within GFF4454at 94.953 kb on - strand, within GFF4454at 95.117 kb on + strand, within GFF4454at 95.117 kb on + strand, within GFF4454at 95.118 kb on - strand, within GFF4454at 95.118 kb on - strand, within GFF4454at 95.156 kb on + strand, within GFF4454at 95.157 kb on - strand, within GFF4454at 95.157 kb on - strand, within GFF4454at 95.240 kb on + strand, within GFF4454at 95.522 kb on + strand, within GFF4454at 95.522 kb on + strand, within GFF4454at 95.522 kb on + strand, within GFF4454at 95.522 kb on + strand, within GFF4454at 95.522 kb on + strand, within GFF4454at 95.522 kb on + strand, within GFF4454at 95.522 kb on + strand, within GFF4454at 95.523 kb on - strand, within GFF4454at 95.523 kb on - strand, within GFF4454at 95.523 kb on - strand, within GFF4454at 95.535 kb on - strand, within GFF4454at 95.573 kb on + strand, within GFF4454at 95.573 kb on + strand, within GFF4454at 95.574 kb on - strand, within GFF4454at 95.616 kb on - strand, within GFF4454at 95.886 kb on - strand, within GFF4454at 95.886 kb on - strand, within GFF4454at 96.143 kb on + strand, within GFF4454at 96.143 kb on + strand, within GFF4454at 96.143 kb on + strand, within GFF4454at 96.143 kb on + strand, within GFF4454at 96.143 kb on + strand, within GFF4454at 96.144 kb on - strand, within GFF4454at 96.144 kb on - strand, within GFF4454at 96.144 kb on - strand, within GFF4454at 96.175 kb on + strand, within GFF4454at 96.302 kb on + strand, within GFF4454at 96.303 kb on - strand, within GFF4454at 96.303 kb on - strand, within GFF4454at 96.311 kb on + strand, within GFF4454at 96.312 kb on - strand, within GFF4454at 96.312 kb on - strand, within GFF4454at 96.312 kb on - strand, within GFF4454at 96.357 kb on - strand, within GFF4454at 96.357 kb on - strand, within GFF4454at 96.721 kb on + strandat 96.721 kb on + strandat 96.721 kb on + strandat 97.231 kb on + strand, within GFF4455at 97.231 kb on + strand, within GFF4455at 97.231 kb on + strand, within GFF4455at 97.231 kb on + strand, within GFF4455at 97.232 kb on - strand, within GFF4455at 97.270 kb on + strand, within GFF4455at 97.271 kb on - strand, within GFF4455at 97.271 kb on - strand, within GFF4455at 97.271 kb on - strand, within GFF4455at 97.345 kb on + strand, within GFF4455at 97.345 kb on + strand, within GFF4455at 97.346 kb on - strand, within GFF4455at 97.346 kb on - strand, within GFF4455at 97.346 kb on - strand, within GFF4455at 97.607 kb on + strandat 97.607 kb on + strandat 97.607 kb on + strandat 97.608 kb on - strandat 97.608 kb on - strandat 97.608 kb on - strandat 97.608 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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93,634 + +0.1
93,686 + -0.9
93,697 + +0.1
93,697 + -0.2
93,697 + -0.1
93,697 + -0.8
93,697 + -0.6
93,698 - -0.4
93,698 - -0.5
93,698 - -0.2
93,698 - -0.9
93,732 + +0.5
93,732 + -0.4
93,732 + +0.1
93,732 + -2.8
93,733 - -0.4
93,733 - +0.9
93,733 - +0.4
93,733 - -0.4
93,733 - -0.2
93,733 - +0.1
93,737 + -0.3
93,737 + +0.6
93,738 - +1.3
93,738 - -1.1
93,849 + +0.4
93,849 + -0.1
93,850 - -0.3
93,850 - +1.1
93,933 + +0.3
93,933 + -0.9
93,933 + -0.3
93,933 + -0.3
93,934 - +0.3
93,972 + GFF4453 0.14 -0.3
93,972 + GFF4453 0.14 +0.8
93,972 + GFF4453 0.14 +1.6
93,972 + GFF4453 0.14 -0.4
93,972 + GFF4453 0.14 +0.5
93,972 + GFF4453 0.14 -0.5
93,973 - GFF4453 0.14 -0.4
93,973 - GFF4453 0.14 +1.6
93,973 - GFF4453 0.14 -0.1
93,973 - GFF4453 0.14 -1.1
93,973 - GFF4453 0.14 -0.5
93,973 - GFF4453 0.14 -0.2
93,973 - GFF4453 0.14 +0.6
94,176 + GFF4453 0.45 +1.6
94,176 + GFF4453 0.45 -0.4
94,176 + GFF4453 0.45 +2.0
94,176 + GFF4453 0.45 -0.0
94,176 + GFF4453 0.45 -0.7
94,176 + GFF4453 0.45 -1.6
94,176 + GFF4453 0.45 -0.0
94,176 + GFF4453 0.45 +1.0
94,177 - GFF4453 0.45 -0.2
94,177 - GFF4453 0.45 -0.1
94,177 - GFF4453 0.45 +1.6
94,177 - GFF4453 0.45 -0.0
94,177 - GFF4453 0.45 -1.8
94,177 - GFF4453 0.45 -0.3
94,177 - GFF4453 0.45 +1.5
94,177 - GFF4453 0.45 -0.5
94,177 - GFF4453 0.45 -0.7
94,185 + GFF4453 0.46 -1.7
94,185 + GFF4453 0.46 -1.1
94,185 + GFF4453 0.46 -1.3
94,185 + GFF4453 0.46 -0.4
94,185 + GFF4453 0.46 -1.2
94,185 + GFF4453 0.46 -0.7
94,185 + GFF4453 0.46 -1.2
94,185 + GFF4453 0.46 +0.4
94,185 + GFF4453 0.46 +0.0
94,185 + GFF4453 0.46 -0.4
94,185 + GFF4453 0.46 -0.7
94,185 + GFF4453 0.46 -0.2
94,186 - GFF4453 0.46 -0.5
94,186 - GFF4453 0.46 -0.1
94,186 - GFF4453 0.46 -0.1
94,186 - GFF4453 0.46 -0.4
94,186 - GFF4453 0.46 +0.8
94,186 - GFF4453 0.46 -0.4
94,186 - GFF4453 0.46 +0.1
94,186 - GFF4453 0.46 +0.2
94,186 - GFF4453 0.46 -1.5
94,186 - GFF4453 0.46 -0.8
94,186 - GFF4453 0.46 -1.5
94,260 + GFF4453 0.57 -0.8
94,261 - GFF4453 0.57 +0.4
94,261 - GFF4453 0.57 -0.5
94,299 + GFF4453 0.63 +0.2
94,300 - GFF4453 0.63 +0.4
94,305 + GFF4453 0.64 -0.4
94,306 - GFF4453 0.64 -0.2
94,306 - GFF4453 0.64 +0.3
94,320 + GFF4453 0.66 -0.2
94,320 + GFF4453 0.66 -0.9
94,320 + GFF4453 0.66 +2.1
94,320 + GFF4453 0.66 -0.1
94,320 + GFF4453 0.66 +0.3
94,320 + GFF4453 0.66 -1.1
94,320 + GFF4453 0.66 -0.7
94,320 + GFF4453 0.66 -0.8
94,320 + GFF4453 0.66 -0.6
94,321 - GFF4453 0.67 +0.5
94,321 - GFF4453 0.67 +0.5
94,321 - GFF4453 0.67 -0.9
94,539 + -0.7
94,539 + -0.1
94,539 + -1.1
94,539 + -1.5
94,540 - -0.7
94,540 - -0.9
94,540 - -0.2
94,540 - -0.1
94,624 + +0.1
94,624 + +0.3
94,624 + -0.9
94,624 + +0.4
94,624 + -2.1
94,624 + +0.9
94,624 + -0.1
94,624 + -0.8
94,625 - -0.6
94,625 - -0.5
94,625 - -1.3
94,632 + +0.3
94,632 + -1.7
94,632 + -0.8
94,632 + -1.4
94,633 - -0.8
94,633 - -0.6
94,633 - -0.8
94,633 - +0.6
94,633 - -2.8
94,656 - -0.9
94,883 + GFF4454 0.13 +0.9
94,883 + GFF4454 0.13 +0.1
94,952 + GFF4454 0.16 -0.4
94,953 - GFF4454 0.16 +0.1
94,953 - GFF4454 0.16 -1.9
95,117 + GFF4454 0.24 -0.7
95,117 + GFF4454 0.24 +1.6
95,118 - GFF4454 0.24 -0.8
95,118 - GFF4454 0.24 -1.2
95,156 + GFF4454 0.26 +1.1
95,157 - GFF4454 0.26 -1.1
95,157 - GFF4454 0.26 -1.2
95,240 + GFF4454 0.30 +0.1
95,522 + GFF4454 0.44 -0.7
95,522 + GFF4454 0.44 -0.4
95,522 + GFF4454 0.44 -0.8
95,522 + GFF4454 0.44 +0.6
95,522 + GFF4454 0.44 -0.7
95,522 + GFF4454 0.44 +1.4
95,522 + GFF4454 0.44 -0.3
95,523 - GFF4454 0.44 -0.2
95,523 - GFF4454 0.44 -0.4
95,523 - GFF4454 0.44 -0.4
95,535 - GFF4454 0.44 -1.2
95,573 + GFF4454 0.46 +0.2
95,573 + GFF4454 0.46 -0.8
95,574 - GFF4454 0.46 -0.2
95,616 - GFF4454 0.48 -1.8
95,886 - GFF4454 0.61 -0.7
95,886 - GFF4454 0.61 -0.8
96,143 + GFF4454 0.74 +0.6
96,143 + GFF4454 0.74 +0.2
96,143 + GFF4454 0.74 -2.3
96,143 + GFF4454 0.74 -0.9
96,143 + GFF4454 0.74 +0.6
96,144 - GFF4454 0.74 -1.7
96,144 - GFF4454 0.74 -0.9
96,144 - GFF4454 0.74 -0.9
96,175 + GFF4454 0.75 -1.9
96,302 + GFF4454 0.81 -2.7
96,303 - GFF4454 0.82 +0.6
96,303 - GFF4454 0.82 -0.4
96,311 + GFF4454 0.82 +1.1
96,312 - GFF4454 0.82 +0.1
96,312 - GFF4454 0.82 +0.1
96,312 - GFF4454 0.82 -0.4
96,357 - GFF4454 0.84 -2.1
96,357 - GFF4454 0.84 -1.4
96,721 + -0.5
96,721 + +0.8
96,721 + -0.5
97,231 + GFF4455 0.59 -1.1
97,231 + GFF4455 0.59 -0.8
97,231 + GFF4455 0.59 -0.1
97,231 + GFF4455 0.59 -0.1
97,232 - GFF4455 0.59 -0.5
97,270 + GFF4455 0.64 +0.1
97,271 - GFF4455 0.64 +1.1
97,271 - GFF4455 0.64 -0.1
97,271 - GFF4455 0.64 -0.2
97,345 + GFF4455 0.72 -0.4
97,345 + GFF4455 0.72 -2.7
97,346 - GFF4455 0.72 -0.7
97,346 - GFF4455 0.72 +0.9
97,346 - GFF4455 0.72 -0.7
97,607 + +0.3
97,607 + -0.2
97,607 + +0.5
97,608 - -0.4
97,608 - -1.0
97,608 - +0.1
97,608 - +0.3

Or see this region's nucleotide sequence