Strain Fitness in Variovorax sp. SCN45 around GFF4446

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4445 and GFF4446 are separated by 4 nucleotidesGFF4446 and GFF4447 are separated by 6 nucleotides GFF4445 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-), at 84,341 to 85,744 GFF4445 GFF4446 - FIG018171: hypothetical protein of Cupin superfamily, at 85,749 to 86,270 GFF4446 GFF4447 - 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54), at 86,277 to 87,395 GFF4447 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2at 84.780 kb on + strand, within GFF4445at 84.848 kb on + strand, within GFF4445at 84.848 kb on + strand, within GFF4445at 84.848 kb on + strand, within GFF4445at 84.848 kb on + strand, within GFF4445at 84.848 kb on + strand, within GFF4445at 84.848 kb on + strand, within GFF4445at 84.848 kb on + strand, within GFF4445at 84.848 kb on + strand, within GFF4445at 84.849 kb on - strand, within GFF4445at 84.849 kb on - strand, within GFF4445at 84.849 kb on - strand, within GFF4445at 84.849 kb on - strand, within GFF4445at 84.849 kb on - strand, within GFF4445at 84.849 kb on - strand, within GFF4445at 84.849 kb on - strand, within GFF4445at 84.849 kb on - strand, within GFF4445at 84.849 kb on - strand, within GFF4445at 84.849 kb on - strand, within GFF4445at 84.890 kb on + strand, within GFF4445at 84.890 kb on + strand, within GFF4445at 84.891 kb on - strand, within GFF4445at 84.891 kb on - strand, within GFF4445at 84.891 kb on - strand, within GFF4445at 84.976 kb on - strand, within GFF4445at 85.346 kb on + strand, within GFF4445at 85.346 kb on + strand, within GFF4445at 85.346 kb on + strand, within GFF4445at 85.347 kb on - strand, within GFF4445at 85.347 kb on - strand, within GFF4445at 85.347 kb on - strand, within GFF4445at 85.758 kb on - strandat 85.758 kb on - strandat 85.758 kb on - strandat 85.804 kb on + strand, within GFF4446at 85.804 kb on + strand, within GFF4446at 85.804 kb on + strand, within GFF4446at 85.804 kb on + strand, within GFF4446at 85.804 kb on + strand, within GFF4446at 85.804 kb on + strand, within GFF4446at 85.804 kb on + strand, within GFF4446at 85.804 kb on + strand, within GFF4446at 85.804 kb on + strand, within GFF4446at 85.805 kb on - strand, within GFF4446at 85.805 kb on - strand, within GFF4446at 85.805 kb on - strand, within GFF4446at 85.805 kb on - strand, within GFF4446at 85.805 kb on - strand, within GFF4446at 85.805 kb on - strand, within GFF4446at 85.830 kb on + strand, within GFF4446at 85.830 kb on + strand, within GFF4446at 85.830 kb on + strand, within GFF4446at 85.830 kb on + strand, within GFF4446at 85.830 kb on + strand, within GFF4446at 85.831 kb on - strand, within GFF4446at 85.831 kb on - strand, within GFF4446at 85.831 kb on - strand, within GFF4446at 85.831 kb on - strand, within GFF4446at 85.831 kb on - strand, within GFF4446at 85.831 kb on - strand, within GFF4446at 85.831 kb on - strand, within GFF4446at 85.831 kb on - strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.908 kb on + strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 85.909 kb on - strand, within GFF4446at 86.145 kb on + strand, within GFF4446at 86.145 kb on + strand, within GFF4446at 86.145 kb on + strand, within GFF4446at 86.145 kb on + strand, within GFF4446at 86.145 kb on + strand, within GFF4446at 86.145 kb on + strand, within GFF4446at 86.145 kb on + strand, within GFF4446at 86.146 kb on - strand, within GFF4446at 86.146 kb on - strand, within GFF4446at 86.146 kb on - strand, within GFF4446at 86.146 kb on - strand, within GFF4446at 86.371 kb on + strandat 86.371 kb on + strandat 86.372 kb on - strandat 86.372 kb on - strandat 86.621 kb on - strand, within GFF4447at 86.621 kb on - strand, within GFF4447at 86.621 kb on - strand, within GFF4447at 86.621 kb on - strand, within GFF4447at 86.706 kb on + strand, within GFF4447at 86.706 kb on + strand, within GFF4447at 86.706 kb on + strand, within GFF4447at 86.707 kb on - strand, within GFF4447at 86.707 kb on - strand, within GFF4447at 86.887 kb on + strand, within GFF4447at 86.887 kb on + strand, within GFF4447at 86.887 kb on + strand, within GFF4447at 86.887 kb on + strand, within GFF4447at 86.887 kb on + strand, within GFF4447at 86.887 kb on + strand, within GFF4447at 86.887 kb on + strand, within GFF4447at 86.887 kb on + strand, within GFF4447at 86.888 kb on - strand, within GFF4447at 86.888 kb on - strand, within GFF4447at 86.888 kb on - strand, within GFF4447at 86.888 kb on - strand, within GFF4447at 86.888 kb on - strand, within GFF4447at 86.888 kb on - strand, within GFF4447at 87.007 kb on + strand, within GFF4447at 87.007 kb on + strand, within GFF4447at 87.008 kb on - strand, within GFF4447at 87.008 kb on - strand, within GFF4447at 87.008 kb on - strand, within GFF4447at 87.008 kb on - strand, within GFF4447at 87.057 kb on + strand, within GFF4447at 87.061 kb on + strand, within GFF4447at 87.094 kb on + strand, within GFF4447at 87.094 kb on + strand, within GFF4447at 87.094 kb on + strand, within GFF4447at 87.095 kb on - strand, within GFF4447at 87.095 kb on - strand, within GFF4447at 87.127 kb on + strand, within GFF4447at 87.127 kb on + strand, within GFF4447at 87.128 kb on - strand, within GFF4447at 87.128 kb on - strand, within GFF4447

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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84,780 + GFF4445 0.31 +1.4
84,848 + GFF4445 0.36 -0.5
84,848 + GFF4445 0.36 -0.4
84,848 + GFF4445 0.36 -0.3
84,848 + GFF4445 0.36 -0.5
84,848 + GFF4445 0.36 -0.9
84,848 + GFF4445 0.36 -0.4
84,848 + GFF4445 0.36 +0.6
84,848 + GFF4445 0.36 +1.1
84,849 - GFF4445 0.36 +0.8
84,849 - GFF4445 0.36 +0.1
84,849 - GFF4445 0.36 -0.5
84,849 - GFF4445 0.36 -0.1
84,849 - GFF4445 0.36 -2.5
84,849 - GFF4445 0.36 +0.9
84,849 - GFF4445 0.36 -0.0
84,849 - GFF4445 0.36 -0.5
84,849 - GFF4445 0.36 -0.2
84,849 - GFF4445 0.36 +0.3
84,890 + GFF4445 0.39 +1.6
84,890 + GFF4445 0.39 -0.2
84,891 - GFF4445 0.39 +0.1
84,891 - GFF4445 0.39 -0.0
84,891 - GFF4445 0.39 -0.4
84,976 - GFF4445 0.45 -0.1
85,346 + GFF4445 0.72 -0.7
85,346 + GFF4445 0.72 -0.0
85,346 + GFF4445 0.72 -0.5
85,347 - GFF4445 0.72 -0.5
85,347 - GFF4445 0.72 -0.1
85,347 - GFF4445 0.72 -1.7
85,758 - -0.5
85,758 - -0.2
85,758 - -0.2
85,804 + GFF4446 0.11 -0.3
85,804 + GFF4446 0.11 -0.6
85,804 + GFF4446 0.11 -0.6
85,804 + GFF4446 0.11 +0.3
85,804 + GFF4446 0.11 +0.3
85,804 + GFF4446 0.11 +0.2
85,804 + GFF4446 0.11 +0.6
85,804 + GFF4446 0.11 +0.8
85,804 + GFF4446 0.11 +0.2
85,805 - GFF4446 0.11 -0.3
85,805 - GFF4446 0.11 +1.4
85,805 - GFF4446 0.11 +0.4
85,805 - GFF4446 0.11 -0.5
85,805 - GFF4446 0.11 -0.1
85,805 - GFF4446 0.11 +1.5
85,830 + GFF4446 0.16 -1.1
85,830 + GFF4446 0.16 -0.8
85,830 + GFF4446 0.16 -0.1
85,830 + GFF4446 0.16 +0.8
85,830 + GFF4446 0.16 -0.4
85,831 - GFF4446 0.16 -0.6
85,831 - GFF4446 0.16 -0.3
85,831 - GFF4446 0.16 -0.1
85,831 - GFF4446 0.16 +0.3
85,831 - GFF4446 0.16 -1.4
85,831 - GFF4446 0.16 +0.6
85,831 - GFF4446 0.16 +0.4
85,831 - GFF4446 0.16 -0.2
85,908 + GFF4446 0.30 +1.6
85,908 + GFF4446 0.30 +0.4
85,908 + GFF4446 0.30 -0.0
85,908 + GFF4446 0.30 +1.1
85,908 + GFF4446 0.30 -0.9
85,908 + GFF4446 0.30 -0.6
85,908 + GFF4446 0.30 -0.2
85,908 + GFF4446 0.30 -1.4
85,908 + GFF4446 0.30 +1.6
85,908 + GFF4446 0.30 -0.2
85,908 + GFF4446 0.30 -0.0
85,908 + GFF4446 0.30 +1.2
85,909 - GFF4446 0.31 +0.1
85,909 - GFF4446 0.31 -0.6
85,909 - GFF4446 0.31 -1.1
85,909 - GFF4446 0.31 -0.1
85,909 - GFF4446 0.31 +0.1
85,909 - GFF4446 0.31 -2.0
85,909 - GFF4446 0.31 +0.1
85,909 - GFF4446 0.31 -0.0
85,909 - GFF4446 0.31 -0.2
85,909 - GFF4446 0.31 +0.9
85,909 - GFF4446 0.31 +0.5
85,909 - GFF4446 0.31 -0.7
85,909 - GFF4446 0.31 +0.4
85,909 - GFF4446 0.31 -0.2
85,909 - GFF4446 0.31 -0.2
85,909 - GFF4446 0.31 -0.1
85,909 - GFF4446 0.31 +0.5
86,145 + GFF4446 0.76 -0.3
86,145 + GFF4446 0.76 -0.5
86,145 + GFF4446 0.76 +0.7
86,145 + GFF4446 0.76 +1.9
86,145 + GFF4446 0.76 -0.8
86,145 + GFF4446 0.76 +0.9
86,145 + GFF4446 0.76 -0.6
86,146 - GFF4446 0.76 -0.3
86,146 - GFF4446 0.76 -0.9
86,146 - GFF4446 0.76 +0.2
86,146 - GFF4446 0.76 +1.1
86,371 + -0.2
86,371 + -0.7
86,372 - -0.9
86,372 - +0.6
86,621 - GFF4447 0.31 -0.9
86,621 - GFF4447 0.31 -1.2
86,621 - GFF4447 0.31 +0.1
86,621 - GFF4447 0.31 -0.5
86,706 + GFF4447 0.38 +0.6
86,706 + GFF4447 0.38 -0.4
86,706 + GFF4447 0.38 -1.2
86,707 - GFF4447 0.38 +0.4
86,707 - GFF4447 0.38 -1.0
86,887 + GFF4447 0.55 +0.3
86,887 + GFF4447 0.55 +0.1
86,887 + GFF4447 0.55 -0.9
86,887 + GFF4447 0.55 +0.2
86,887 + GFF4447 0.55 -0.0
86,887 + GFF4447 0.55 +0.6
86,887 + GFF4447 0.55 -0.9
86,887 + GFF4447 0.55 -0.9
86,888 - GFF4447 0.55 -0.2
86,888 - GFF4447 0.55 -0.8
86,888 - GFF4447 0.55 -0.7
86,888 - GFF4447 0.55 -0.6
86,888 - GFF4447 0.55 -0.5
86,888 - GFF4447 0.55 -0.9
87,007 + GFF4447 0.65 -0.7
87,007 + GFF4447 0.65 +1.6
87,008 - GFF4447 0.65 -1.1
87,008 - GFF4447 0.65 -0.5
87,008 - GFF4447 0.65 -0.9
87,008 - GFF4447 0.65 +0.1
87,057 + GFF4447 0.70 +1.9
87,061 + GFF4447 0.70 -0.6
87,094 + GFF4447 0.73 -0.9
87,094 + GFF4447 0.73 +1.2
87,094 + GFF4447 0.73 -0.2
87,095 - GFF4447 0.73 -0.9
87,095 - GFF4447 0.73 -0.0
87,127 + GFF4447 0.76 +1.0
87,127 + GFF4447 0.76 -0.7
87,128 - GFF4447 0.76 -1.0
87,128 - GFF4447 0.76 +1.6

Or see this region's nucleotide sequence