Strain Fitness in Variovorax sp. SCN45 around GFF44

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF43 and GFF44 are separated by 46 nucleotidesGFF44 and GFF45 are separated by 26 nucleotides GFF43 - hypothetical protein, at 44,860 to 46,923 GFF43 GFF44 - hypothetical protein, at 46,970 to 47,146 GFF44 GFF45 - Phospholipase C (EC 3.1.4.3), at 47,173 to 49,449 GFF45 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 46.008 kb on + strand, within GFF43at 46.008 kb on + strand, within GFF43at 46.009 kb on - strand, within GFF43at 46.034 kb on - strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.075 kb on + strand, within GFF43at 46.076 kb on - strand, within GFF43at 46.076 kb on - strand, within GFF43at 46.076 kb on - strand, within GFF43at 46.081 kb on + strand, within GFF43at 46.081 kb on + strand, within GFF43at 46.081 kb on + strand, within GFF43at 46.081 kb on + strand, within GFF43at 46.081 kb on + strand, within GFF43at 46.082 kb on - strand, within GFF43at 46.082 kb on - strand, within GFF43at 46.082 kb on - strand, within GFF43at 46.082 kb on - strand, within GFF43at 46.082 kb on - strand, within GFF43at 46.083 kb on + strand, within GFF43at 46.084 kb on - strand, within GFF43at 46.084 kb on - strand, within GFF43at 46.171 kb on + strand, within GFF43at 46.171 kb on + strand, within GFF43at 46.172 kb on - strand, within GFF43at 46.172 kb on - strand, within GFF43at 46.172 kb on - strand, within GFF43at 46.172 kb on - strand, within GFF43at 46.174 kb on + strand, within GFF43at 46.265 kb on + strand, within GFF43at 46.265 kb on + strand, within GFF43at 46.266 kb on - strand, within GFF43at 46.266 kb on - strand, within GFF43at 46.266 kb on - strand, within GFF43at 46.266 kb on - strand, within GFF43at 46.266 kb on - strand, within GFF43at 46.457 kb on - strand, within GFF43at 46.486 kb on + strand, within GFF43at 46.487 kb on - strand, within GFF43at 46.487 kb on - strand, within GFF43at 46.487 kb on - strand, within GFF43at 46.618 kb on + strand, within GFF43at 46.619 kb on - strand, within GFF43at 46.619 kb on - strand, within GFF43at 46.663 kb on + strand, within GFF43at 46.663 kb on + strand, within GFF43at 46.663 kb on + strand, within GFF43at 46.664 kb on - strand, within GFF43at 46.664 kb on - strand, within GFF43at 46.664 kb on - strand, within GFF43at 46.783 kb on + strandat 46.783 kb on + strandat 46.783 kb on + strandat 46.783 kb on + strandat 46.784 kb on - strandat 46.784 kb on - strandat 46.786 kb on + strandat 46.786 kb on + strandat 46.786 kb on + strandat 46.787 kb on - strandat 46.787 kb on - strandat 46.787 kb on - strandat 46.885 kb on + strandat 46.885 kb on + strandat 46.886 kb on - strandat 46.886 kb on - strandat 46.886 kb on - strandat 46.886 kb on - strandat 46.886 kb on - strandat 47.001 kb on + strand, within GFF44at 47.359 kb on + strandat 47.359 kb on + strandat 47.474 kb on - strand, within GFF45at 47.517 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.569 kb on + strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.570 kb on - strand, within GFF45at 47.608 kb on + strand, within GFF45at 47.609 kb on - strand, within GFF45at 47.609 kb on - strand, within GFF45at 47.691 kb on + strand, within GFF45at 47.691 kb on + strand, within GFF45at 47.691 kb on + strand, within GFF45at 47.692 kb on - strand, within GFF45at 47.875 kb on + strand, within GFF45at 47.875 kb on + strand, within GFF45at 47.875 kb on + strand, within GFF45at 47.875 kb on + strand, within GFF45at 47.876 kb on - strand, within GFF45at 47.938 kb on + strand, within GFF45at 47.938 kb on + strand, within GFF45at 47.938 kb on + strand, within GFF45at 47.939 kb on - strand, within GFF45at 47.939 kb on - strand, within GFF45at 47.939 kb on - strand, within GFF45at 47.964 kb on + strand, within GFF45at 47.972 kb on - strand, within GFF45at 48.013 kb on + strand, within GFF45at 48.013 kb on + strand, within GFF45at 48.014 kb on - strand, within GFF45at 48.059 kb on - strand, within GFF45at 48.059 kb on - strand, within GFF45at 48.059 kb on - strand, within GFF45at 48.059 kb on - strand, within GFF45at 48.059 kb on - strand, within GFF45at 48.094 kb on + strand, within GFF45at 48.094 kb on + strand, within GFF45at 48.095 kb on - strand, within GFF45

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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46,008 + GFF43 0.56 -1.1
46,008 + GFF43 0.56 +1.2
46,009 - GFF43 0.56 -1.2
46,034 - GFF43 0.57 +0.8
46,075 + GFF43 0.59 -0.1
46,075 + GFF43 0.59 +1.2
46,075 + GFF43 0.59 -0.1
46,075 + GFF43 0.59 -1.4
46,075 + GFF43 0.59 +0.0
46,075 + GFF43 0.59 -0.1
46,075 + GFF43 0.59 -1.0
46,076 - GFF43 0.59 +1.0
46,076 - GFF43 0.59 -1.0
46,076 - GFF43 0.59 -0.7
46,081 + GFF43 0.59 -1.0
46,081 + GFF43 0.59 +0.8
46,081 + GFF43 0.59 -0.7
46,081 + GFF43 0.59 -0.4
46,081 + GFF43 0.59 +0.2
46,082 - GFF43 0.59 -0.1
46,082 - GFF43 0.59 -0.2
46,082 - GFF43 0.59 +0.1
46,082 - GFF43 0.59 -0.4
46,082 - GFF43 0.59 +0.6
46,083 + GFF43 0.59 +0.4
46,084 - GFF43 0.59 +0.1
46,084 - GFF43 0.59 -0.7
46,171 + GFF43 0.64 +0.1
46,171 + GFF43 0.64 -0.5
46,172 - GFF43 0.64 -0.3
46,172 - GFF43 0.64 -0.1
46,172 - GFF43 0.64 +0.1
46,172 - GFF43 0.64 +0.2
46,174 + GFF43 0.64 -0.8
46,265 + GFF43 0.68 -0.6
46,265 + GFF43 0.68 -0.6
46,266 - GFF43 0.68 -1.1
46,266 - GFF43 0.68 +0.5
46,266 - GFF43 0.68 +0.4
46,266 - GFF43 0.68 +0.6
46,266 - GFF43 0.68 -0.8
46,457 - GFF43 0.77 -1.2
46,486 + GFF43 0.79 +0.6
46,487 - GFF43 0.79 +1.1
46,487 - GFF43 0.79 -1.4
46,487 - GFF43 0.79 -0.7
46,618 + GFF43 0.85 +1.7
46,619 - GFF43 0.85 +1.0
46,619 - GFF43 0.85 -0.6
46,663 + GFF43 0.87 +0.6
46,663 + GFF43 0.87 -2.6
46,663 + GFF43 0.87 -1.1
46,664 - GFF43 0.87 +0.3
46,664 - GFF43 0.87 +0.5
46,664 - GFF43 0.87 -1.9
46,783 + -0.2
46,783 + +1.5
46,783 + -0.1
46,783 + -0.4
46,784 - -2.4
46,784 - -0.4
46,786 + -2.3
46,786 + -0.8
46,786 + -0.7
46,787 - +0.8
46,787 - -0.3
46,787 - +0.3
46,885 + -1.6
46,885 + -0.2
46,886 - -0.7
46,886 - -1.0
46,886 - +0.7
46,886 - +0.8
46,886 - -0.4
47,001 + GFF44 0.18 +0.3
47,359 + -0.3
47,359 + -0.7
47,474 - GFF45 0.13 -0.2
47,517 + GFF45 0.15 -0.1
47,569 + GFF45 0.17 -0.3
47,569 + GFF45 0.17 +0.4
47,569 + GFF45 0.17 -0.3
47,569 + GFF45 0.17 +0.7
47,569 + GFF45 0.17 -0.4
47,569 + GFF45 0.17 -0.4
47,569 + GFF45 0.17 -0.4
47,569 + GFF45 0.17 -0.7
47,570 - GFF45 0.17 -0.4
47,570 - GFF45 0.17 +0.4
47,570 - GFF45 0.17 -0.4
47,570 - GFF45 0.17 +0.5
47,570 - GFF45 0.17 -0.8
47,570 - GFF45 0.17 -0.8
47,570 - GFF45 0.17 -0.3
47,608 + GFF45 0.19 +0.1
47,609 - GFF45 0.19 -1.4
47,609 - GFF45 0.19 -0.4
47,691 + GFF45 0.23 -0.8
47,691 + GFF45 0.23 -2.0
47,691 + GFF45 0.23 -0.2
47,692 - GFF45 0.23 -0.8
47,875 + GFF45 0.31 +0.1
47,875 + GFF45 0.31 -0.3
47,875 + GFF45 0.31 +0.2
47,875 + GFF45 0.31 -0.1
47,876 - GFF45 0.31 +0.4
47,938 + GFF45 0.34 -0.8
47,938 + GFF45 0.34 -0.1
47,938 + GFF45 0.34 -1.1
47,939 - GFF45 0.34 +0.2
47,939 - GFF45 0.34 -0.3
47,939 - GFF45 0.34 +0.3
47,964 + GFF45 0.35 +0.2
47,972 - GFF45 0.35 -0.4
48,013 + GFF45 0.37 -0.1
48,013 + GFF45 0.37 -0.3
48,014 - GFF45 0.37 -0.5
48,059 - GFF45 0.39 +0.6
48,059 - GFF45 0.39 -0.6
48,059 - GFF45 0.39 +0.9
48,059 - GFF45 0.39 +0.8
48,059 - GFF45 0.39 -0.5
48,094 + GFF45 0.40 -0.3
48,094 + GFF45 0.40 -0.4
48,095 - GFF45 0.40 -1.0

Or see this region's nucleotide sequence