Strain Fitness in Variovorax sp. SCN45 around GFF4378

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
8,679	+		GFF4377	0.55	-0.7
8,680	-		GFF4377	0.55	-0.7
8,680	-		GFF4377	0.55	+0.5
8,680	-		GFF4377	0.55	-1.9
9,223	+		GFF4377	0.81	+0.8
9,345	+		GFF4377	0.87	-1.7
9,345	+		GFF4377	0.87	-0.4
9,345	+		GFF4377	0.87	-0.5
9,346	-		GFF4377	0.87	-0.1
9,346	-		GFF4377	0.87	-0.3
9,393	+		GFF4377	0.89	+0.9
9,394	-		GFF4377	0.90	+0.5
9,394	-		GFF4377	0.90	+0.1
9,719	+		GFF4378	0.40	+0.5
9,719	+		GFF4378	0.40	+0.4
9,719	+		GFF4378	0.40	-1.0
9,720	-		GFF4378	0.41	+0.2
9,720	-		GFF4378	0.41	-0.9
9,720	-		GFF4378	0.41	-0.2
9,720	-		GFF4378	0.41	+1.1
9,776	+		GFF4378	0.61	+0.5
9,885	-				+0.1
9,885	-				+0.1
10,114	-				+0.1
10,114	-				-1.4
10,179	+				-0.1
10,179	+				+0.4
10,179	+				+0.6
10,179	+				+1.6
10,179	+				-0.4
10,179	+				+0.6
10,179	+				-0.9
10,180	-				-0.1
10,180	-				-1.4
10,180	-				+0.5
10,224	+				-0.4
10,224	+				-1.4
10,224	+				+0.1
10,225	-				+0.3
10,225	-				-0.7
10,225	-				-0.6
10,486	+				+0.2
10,487	-				+0.3
10,644	+				-0.7
10,644	+				-0.5
10,645	-				-0.4
10,645	-				-1.4
10,645	-				+0.3
10,645	-				+0.3
10,834	+		GFF4379	0.62	-0.0
10,834	+		GFF4379	0.62	-1.2
10,834	+		GFF4379	0.62	+0.4
10,834	+		GFF4379	0.62	+0.2
10,834	+		GFF4379	0.62	-0.2
10,834	+		GFF4379	0.62	+0.1
10,834	+		GFF4379	0.62	-0.3
10,834	+		GFF4379	0.62	-1.0
10,834	+		GFF4379	0.62	+0.8
10,834	+		GFF4379	0.62	-0.2
10,834	+		GFF4379	0.62	-0.1
10,834	+		GFF4379	0.62	-1.2
10,834	+		GFF4379	0.62	-0.2
10,834	+		GFF4379	0.62	-0.1
10,834	+		GFF4379	0.62	+1.6
10,834	+		GFF4379	0.62	-1.2
10,834	+		GFF4379	0.62	-0.6
10,834	+		GFF4379	0.62	-1.0
10,835	-		GFF4379	0.62	-1.0
10,835	-		GFF4379	0.62	-0.3
10,835	-		GFF4379	0.62	-1.5
10,835	-		GFF4379	0.62	+0.1
10,835	-		GFF4379	0.62	-1.0
10,835	-		GFF4379	0.62	-0.5
10,835	-		GFF4379	0.62	-1.0
10,835	-		GFF4379	0.62	-0.3
10,835	-		GFF4379	0.62	-0.8
10,835	-		GFF4379	0.62	+0.1
10,835	-		GFF4379	0.62	-0.4
10,835	-		GFF4379	0.62	-1.1
10,835	-		GFF4379	0.62	+0.7
10,835	-		GFF4379	0.62	-0.3
10,835	-		GFF4379	0.62	+1.2
10,835	-		GFF4379	0.62	-0.8
10,835	-		GFF4379	0.62	-0.3
10,835	-		GFF4379	0.62	+0.6
10,835	-		GFF4379	0.62	-1.2
10,835	-		GFF4379	0.62	-0.4
10,835	-		GFF4379	0.62	+1.3
10,835	-		GFF4379	0.62	+0.1
10,879	+		GFF4379	0.76	-0.8
10,879	+		GFF4379	0.76	-3.3
10,879	+		GFF4379	0.76	+1.6
10,879	+		GFF4379	0.76	-0.2
10,879	+		GFF4379	0.76	+0.2
10,879	+		GFF4379	0.76	-1.4
10,879	+		GFF4379	0.76	+0.4
10,879	+		GFF4379	0.76	-0.1
10,880	-		GFF4379	0.77	-1.2
10,880	-		GFF4379	0.77	-0.5
10,880	-		GFF4379	0.77	+0.2
10,880	-		GFF4379	0.77	+0.1
10,880	-		GFF4379	0.77	-0.8