Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4353 and GFF4354 are separated by 39 nucleotides GFF4354 and GFF4355 are separated by 24 nucleotides GFF4355 and GFF4356 are separated by 162 nucleotides
GFF4353 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 276,292 to 277,440
GFF4353
GFF4354 - KEGG: phosphoglycerate mutase , at 277,480 to 278,061
GFF4354
GFF4355 - Alcohol dehydrogenase (EC 1.1.1.1), at 278,086 to 279,123
GFF4355
GFF4356 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 279,286 to 280,458
GFF4356
Position (kb) 278
279
280 Strain fitness (log2 ratio) -1
0
1
2 at 277.449 kb on + strand at 277.450 kb on - strand at 277.481 kb on + strand at 278.259 kb on - strand, within GFF4355 at 278.465 kb on + strand, within GFF4355 at 278.747 kb on + strand, within GFF4355 at 278.855 kb on + strand, within GFF4355 at 278.881 kb on + strand, within GFF4355 at 278.882 kb on - strand, within GFF4355 at 278.882 kb on - strand, within GFF4355 at 278.993 kb on + strand, within GFF4355 at 278.994 kb on - strand, within GFF4355 at 279.138 kb on - strand at 279.694 kb on + strand, within GFF4356 at 279.694 kb on + strand, within GFF4356 at 279.793 kb on + strand, within GFF4356 at 279.794 kb on - strand, within GFF4356 at 279.985 kb on + strand, within GFF4356 at 279.985 kb on + strand, within GFF4356 at 279.985 kb on + strand, within GFF4356 at 280.006 kb on + strand, within GFF4356 at 280.007 kb on - strand, within GFF4356 at 280.007 kb on - strand, within GFF4356 at 280.061 kb on + strand, within GFF4356
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 277,449 + -0.0 277,450 - +0.1 277,481 + -0.2 278,259 - GFF4355 0.17 -0.2 278,465 + GFF4355 0.37 -1.3 278,747 + GFF4355 0.64 +0.2 278,855 + GFF4355 0.74 +2.1 278,881 + GFF4355 0.77 -0.6 278,882 - GFF4355 0.77 +0.1 278,882 - GFF4355 0.77 -0.1 278,993 + GFF4355 0.87 -0.3 278,994 - GFF4355 0.87 +1.9 279,138 - -0.2 279,694 + GFF4356 0.35 -0.3 279,694 + GFF4356 0.35 -0.8 279,793 + GFF4356 0.43 -1.0 279,794 - GFF4356 0.43 +1.0 279,985 + GFF4356 0.60 -0.0 279,985 + GFF4356 0.60 -0.2 279,985 + GFF4356 0.60 -1.3 280,006 + GFF4356 0.61 +0.3 280,007 - GFF4356 0.61 -1.1 280,007 - GFF4356 0.61 -0.2 280,061 + GFF4356 0.66 +1.9
Or see this region's nucleotide sequence