Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4264 and GFF4265 are separated by 27 nucleotides GFF4265 and GFF4266 are separated by 63 nucleotides
GFF4264 - surface antigen gene, at 183,592 to 185,025
GFF4264
GFF4265 - hypothetical protein, at 185,053 to 186,315
GFF4265
GFF4266 - Alkanal monooxygenase alpha chain (EC 1.14.14.3), at 186,379 to 187,401
GFF4266
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1
2 at 184.075 kb on + strand, within GFF4264 at 184.139 kb on - strand, within GFF4264 at 184.174 kb on + strand, within GFF4264 at 184.175 kb on - strand, within GFF4264 at 184.175 kb on - strand, within GFF4264 at 184.175 kb on - strand, within GFF4264 at 184.175 kb on - strand, within GFF4264 at 184.178 kb on + strand, within GFF4264 at 184.178 kb on + strand, within GFF4264 at 184.178 kb on + strand, within GFF4264 at 184.179 kb on - strand, within GFF4264 at 184.179 kb on - strand, within GFF4264 at 184.210 kb on + strand, within GFF4264 at 184.319 kb on - strand, within GFF4264 at 184.371 kb on + strand, within GFF4264 at 184.372 kb on - strand, within GFF4264 at 184.372 kb on - strand, within GFF4264 at 184.372 kb on - strand, within GFF4264 at 184.463 kb on - strand, within GFF4264 at 184.463 kb on - strand, within GFF4264 at 184.606 kb on + strand, within GFF4264 at 184.606 kb on + strand, within GFF4264 at 184.750 kb on + strand, within GFF4264 at 184.750 kb on + strand, within GFF4264 at 184.751 kb on - strand, within GFF4264 at 184.786 kb on + strand, within GFF4264 at 184.786 kb on + strand, within GFF4264 at 184.786 kb on + strand, within GFF4264 at 184.787 kb on - strand, within GFF4264 at 184.930 kb on + strand at 184.930 kb on + strand at 186.131 kb on + strand, within GFF4265 at 186.132 kb on - strand, within GFF4265 at 186.132 kb on - strand, within GFF4265 at 186.440 kb on + strand at 186.440 kb on + strand at 186.440 kb on + strand at 186.441 kb on - strand at 186.545 kb on + strand, within GFF4266 at 186.545 kb on + strand, within GFF4266 at 186.623 kb on + strand, within GFF4266 at 186.623 kb on + strand, within GFF4266 at 186.623 kb on + strand, within GFF4266 at 186.623 kb on + strand, within GFF4266 at 186.624 kb on - strand, within GFF4266 at 186.624 kb on - strand, within GFF4266 at 186.624 kb on - strand, within GFF4266 at 186.624 kb on - strand, within GFF4266 at 187.136 kb on + strand, within GFF4266 at 187.136 kb on + strand, within GFF4266 at 187.136 kb on + strand, within GFF4266 at 187.266 kb on - strand, within GFF4266
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 184,075 + GFF4264 0.34 +1.8 184,139 - GFF4264 0.38 -0.7 184,174 + GFF4264 0.41 +1.0 184,175 - GFF4264 0.41 +0.2 184,175 - GFF4264 0.41 -1.0 184,175 - GFF4264 0.41 -1.3 184,175 - GFF4264 0.41 -0.1 184,178 + GFF4264 0.41 -0.8 184,178 + GFF4264 0.41 +0.4 184,178 + GFF4264 0.41 +0.4 184,179 - GFF4264 0.41 -0.5 184,179 - GFF4264 0.41 -0.4 184,210 + GFF4264 0.43 +1.6 184,319 - GFF4264 0.51 +0.5 184,371 + GFF4264 0.54 -0.0 184,372 - GFF4264 0.54 -0.4 184,372 - GFF4264 0.54 +1.9 184,372 - GFF4264 0.54 -1.2 184,463 - GFF4264 0.61 -0.5 184,463 - GFF4264 0.61 -0.3 184,606 + GFF4264 0.71 +0.4 184,606 + GFF4264 0.71 +1.6 184,750 + GFF4264 0.81 -0.4 184,750 + GFF4264 0.81 +0.3 184,751 - GFF4264 0.81 -0.1 184,786 + GFF4264 0.83 -0.9 184,786 + GFF4264 0.83 -0.6 184,786 + GFF4264 0.83 -0.2 184,787 - GFF4264 0.83 +1.8 184,930 + -0.7 184,930 + +0.0 186,131 + GFF4265 0.85 +0.9 186,132 - GFF4265 0.85 +0.1 186,132 - GFF4265 0.85 +1.9 186,440 + -0.3 186,440 + -0.4 186,440 + -0.2 186,441 - +1.8 186,545 + GFF4266 0.16 -0.2 186,545 + GFF4266 0.16 -0.2 186,623 + GFF4266 0.24 -0.1 186,623 + GFF4266 0.24 -0.1 186,623 + GFF4266 0.24 -0.5 186,623 + GFF4266 0.24 +0.7 186,624 - GFF4266 0.24 +1.6 186,624 - GFF4266 0.24 +0.1 186,624 - GFF4266 0.24 -0.0 186,624 - GFF4266 0.24 -0.1 187,136 + GFF4266 0.74 -0.2 187,136 + GFF4266 0.74 -0.4 187,136 + GFF4266 0.74 +1.1 187,266 - GFF4266 0.87 +0.6
Or see this region's nucleotide sequence