Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4220 and GFF4221 overlap by 4 nucleotides GFF4221 and GFF4222 overlap by 4 nucleotides GFF4222 and GFF4223 are separated by 34 nucleotides
GFF4220 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6), at 133,232 to 133,918
GFF4220
GFF4221 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6), at 133,915 to 134,577
GFF4221
GFF4222 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 134,574 to 135,767
GFF4222
GFF4223 - BUG/TctC family periplasmic protein, at 135,802 to 136,788
GFF4223
Position (kb) 134
135
136 Strain fitness (log2 ratio) -1
0
1
2 at 134.076 kb on - strand, within GFF4221 at 134.076 kb on - strand, within GFF4221 at 134.313 kb on - strand, within GFF4221 at 134.959 kb on + strand, within GFF4222 at 134.960 kb on - strand, within GFF4222 at 135.550 kb on + strand, within GFF4222 at 135.550 kb on + strand, within GFF4222 at 135.551 kb on - strand, within GFF4222 at 135.551 kb on - strand, within GFF4222 at 135.637 kb on + strand, within GFF4222 at 135.638 kb on - strand, within GFF4222 at 135.638 kb on - strand, within GFF4222 at 135.638 kb on - strand, within GFF4222 at 135.758 kb on - strand at 136.230 kb on - strand, within GFF4223 at 136.230 kb on - strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.423 kb on + strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.424 kb on - strand, within GFF4223 at 136.427 kb on + strand, within GFF4223 at 136.427 kb on + strand, within GFF4223 at 136.427 kb on + strand, within GFF4223 at 136.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 134,076 - GFF4221 0.24 +1.0 134,076 - GFF4221 0.24 -0.7 134,313 - GFF4221 0.60 -0.4 134,959 + GFF4222 0.32 +0.6 134,960 - GFF4222 0.32 -0.2 135,550 + GFF4222 0.82 -0.7 135,550 + GFF4222 0.82 -0.9 135,551 - GFF4222 0.82 +0.6 135,551 - GFF4222 0.82 -0.2 135,637 + GFF4222 0.89 +0.8 135,638 - GFF4222 0.89 +0.1 135,638 - GFF4222 0.89 +0.5 135,638 - GFF4222 0.89 +2.0 135,758 - -0.8 136,230 - GFF4223 0.43 -0.9 136,230 - GFF4223 0.43 -0.7 136,423 + GFF4223 0.63 +0.6 136,423 + GFF4223 0.63 -0.2 136,423 + GFF4223 0.63 -0.7 136,423 + GFF4223 0.63 +1.6 136,424 - GFF4223 0.63 +1.3 136,424 - GFF4223 0.63 +1.0 136,424 - GFF4223 0.63 -0.3 136,424 - GFF4223 0.63 +0.4 136,424 - GFF4223 0.63 +0.6 136,427 + GFF4223 0.63 +1.0 136,427 + GFF4223 0.63 +0.1 136,427 + GFF4223 0.63 +0.6 136,704 - -1.1
Or see this region's nucleotide sequence