Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4217 and GFF4218 are separated by 141 nucleotides GFF4218 and GFF4219 overlap by 4 nucleotides GFF4219 and GFF4220 are separated by 12 nucleotides
GFF4217 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 131,448 to 132,464
GFF4217
GFF4218 - no description, at 132,606 to 132,731
GFF4218
GFF4219 - Transcriptional regulator, MerR family, at 132,728 to 133,219
GFF4219
GFF4220 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6), at 133,232 to 133,918
GFF4220
Position (kb) 132
133 Strain fitness (log2 ratio) -1
0
1 at 131.707 kb on + strand, within GFF4217 at 131.707 kb on + strand, within GFF4217 at 132.593 kb on + strand at 132.594 kb on - strand at 132.594 kb on - strand at 132.594 kb on - strand at 132.594 kb on - strand at 132.600 kb on + strand at 132.600 kb on + strand at 132.601 kb on - strand at 132.696 kb on + strand, within GFF4218 at 132.696 kb on + strand, within GFF4218 at 132.696 kb on + strand, within GFF4218 at 132.696 kb on + strand, within GFF4218 at 132.697 kb on - strand, within GFF4218 at 132.697 kb on - strand, within GFF4218 at 132.697 kb on - strand, within GFF4218 at 132.773 kb on + strand at 132.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 131,707 + GFF4217 0.25 -0.1 131,707 + GFF4217 0.25 +0.1 132,593 + -0.5 132,594 - +0.1 132,594 - -0.3 132,594 - -1.1 132,594 - -0.1 132,600 + -0.0 132,600 + +0.4 132,601 - -1.3 132,696 + GFF4218 0.71 +0.0 132,696 + GFF4218 0.71 -1.0 132,696 + GFF4218 0.71 -0.0 132,696 + GFF4218 0.71 +0.9 132,697 - GFF4218 0.72 +0.8 132,697 - GFF4218 0.72 +0.1 132,697 - GFF4218 0.72 +0.4 132,773 + +1.3 132,774 - -0.2
Or see this region's nucleotide sequence