Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4215 and GFF4216 are separated by 87 nucleotides GFF4216 and GFF4217 are separated by 159 nucleotides GFF4217 and GFF4218 are separated by 141 nucleotides GFF4218 and GFF4219 overlap by 4 nucleotides GFF4219 and GFF4220 are separated by 12 nucleotides
GFF4215 - L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 1 AapQ, at 130,176 to 130,856
GFF4215
GFF4216 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 130,944 to 131,288
GFF4216
GFF4217 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 131,448 to 132,464
GFF4217
GFF4218 - no description, at 132,606 to 132,731
GFF4218
GFF4219 - Transcriptional regulator, MerR family, at 132,728 to 133,219
GFF4219
GFF4220 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6), at 133,232 to 133,918
GFF4220
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.543 kb on + strand, within GFF4215 at 130.543 kb on + strand, within GFF4215 at 130.972 kb on + strand at 131.020 kb on - strand, within GFF4216 at 131.282 kb on - strand at 131.390 kb on + strand at 131.391 kb on - strand at 131.391 kb on - strand at 131.467 kb on + strand at 131.467 kb on + strand at 131.467 kb on + strand at 131.468 kb on - strand at 131.468 kb on - strand at 131.488 kb on + strand at 131.489 kb on - strand at 131.568 kb on + strand, within GFF4217 at 131.587 kb on + strand, within GFF4217 at 131.588 kb on - strand, within GFF4217 at 131.588 kb on - strand, within GFF4217 at 131.588 kb on - strand, within GFF4217 at 131.707 kb on + strand, within GFF4217 at 131.707 kb on + strand, within GFF4217 at 132.593 kb on + strand at 132.594 kb on - strand at 132.594 kb on - strand at 132.594 kb on - strand at 132.594 kb on - strand at 132.600 kb on + strand at 132.600 kb on + strand at 132.601 kb on - strand at 132.696 kb on + strand, within GFF4218 at 132.696 kb on + strand, within GFF4218 at 132.696 kb on + strand, within GFF4218 at 132.696 kb on + strand, within GFF4218 at 132.697 kb on - strand, within GFF4218 at 132.697 kb on - strand, within GFF4218 at 132.697 kb on - strand, within GFF4218 at 132.773 kb on + strand at 132.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 130,543 + GFF4215 0.54 -0.4 130,543 + GFF4215 0.54 -0.5 130,972 + -0.4 131,020 - GFF4216 0.22 -0.3 131,282 - -0.4 131,390 + -0.6 131,391 - -1.6 131,391 - -0.5 131,467 + -0.3 131,467 + -0.0 131,467 + +2.2 131,468 - +1.1 131,468 - -0.3 131,488 + -0.3 131,489 - -0.4 131,568 + GFF4217 0.12 +0.7 131,587 + GFF4217 0.14 -0.4 131,588 - GFF4217 0.14 +1.3 131,588 - GFF4217 0.14 +0.6 131,588 - GFF4217 0.14 -1.9 131,707 + GFF4217 0.25 -0.1 131,707 + GFF4217 0.25 +0.1 132,593 + -0.5 132,594 - +0.1 132,594 - -0.3 132,594 - -1.1 132,594 - -0.1 132,600 + -0.0 132,600 + +0.4 132,601 - -1.3 132,696 + GFF4218 0.71 +0.0 132,696 + GFF4218 0.71 -1.0 132,696 + GFF4218 0.71 -0.0 132,696 + GFF4218 0.71 +0.9 132,697 - GFF4218 0.72 +0.8 132,697 - GFF4218 0.72 +0.1 132,697 - GFF4218 0.72 +0.4 132,773 + +1.3 132,774 - -0.2
Or see this region's nucleotide sequence