Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4208 and GFF4209 are separated by 42 nucleotides GFF4209 and GFF4210 are separated by 15 nucleotides GFF4210 and GFF4211 overlap by 14 nucleotides GFF4211 and GFF4212 are separated by 111 nucleotides
GFF4208 - BUG/TctC family periplasmic protein, at 123,499 to 124,488
GFF4208
GFF4209 - no description, at 124,531 to 125,439
GFF4209
GFF4210 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 125,455 to 126,255
GFF4210
GFF4211 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 126,242 to 126,913
GFF4211
GFF4212 - Methionine gamma-lyase (EC 4.4.1.11), at 127,025 to 128,233
GFF4212
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1 at 124.826 kb on + strand, within GFF4209 at 124.826 kb on + strand, within GFF4209 at 124.827 kb on - strand, within GFF4209 at 124.974 kb on - strand, within GFF4209 at 124.979 kb on + strand, within GFF4209 at 124.979 kb on + strand, within GFF4209 at 125.103 kb on - strand, within GFF4209 at 125.328 kb on + strand, within GFF4209 at 125.388 kb on - strand at 125.422 kb on + strand at 125.423 kb on - strand at 125.510 kb on + strand at 125.511 kb on - strand at 125.876 kb on + strand, within GFF4210 at 125.924 kb on + strand, within GFF4210 at 126.414 kb on + strand, within GFF4211 at 126.414 kb on + strand, within GFF4211 at 126.415 kb on - strand, within GFF4211 at 126.420 kb on + strand, within GFF4211 at 126.421 kb on - strand, within GFF4211 at 126.421 kb on - strand, within GFF4211 at 126.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 124,826 + GFF4209 0.32 +0.4 124,826 + GFF4209 0.32 -0.7 124,827 - GFF4209 0.33 +0.4 124,974 - GFF4209 0.49 -0.7 124,979 + GFF4209 0.49 -2.0 124,979 + GFF4209 0.49 +0.3 125,103 - GFF4209 0.63 -0.3 125,328 + GFF4209 0.88 -0.1 125,388 - -0.1 125,422 + -0.8 125,423 - +1.6 125,510 + +0.3 125,511 - +0.4 125,876 + GFF4210 0.53 -0.1 125,924 + GFF4210 0.59 +0.9 126,414 + GFF4211 0.26 -0.1 126,414 + GFF4211 0.26 -0.8 126,415 - GFF4211 0.26 -0.9 126,420 + GFF4211 0.26 +0.4 126,421 - GFF4211 0.27 -0.5 126,421 - GFF4211 0.27 -0.4 126,917 + +1.3
Or see this region's nucleotide sequence