Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4145 and GFF4146 are separated by 82 nucleotides GFF4146 and GFF4147 overlap by 17 nucleotides GFF4147 and GFF4148 are separated by 147 nucleotides
GFF4145 - transcriptional regulators-like protein, at 51,764 to 52,654
GFF4145
GFF4146 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 52,737 to 53,672
GFF4146
GFF4147 - hypothetical protein, at 53,656 to 53,946
GFF4147
GFF4148 - hypothetical protein, at 54,094 to 55,098
GFF4148
Position (kb) 52
53
54 Strain fitness (log2 ratio) -2
-1
0
1 at 51.982 kb on - strand, within GFF4145 at 52.691 kb on - strand at 52.691 kb on - strand at 52.692 kb on + strand at 52.692 kb on + strand at 53.008 kb on - strand, within GFF4146 at 53.008 kb on - strand, within GFF4146 at 53.253 kb on + strand, within GFF4146 at 53.724 kb on - strand, within GFF4147 at 53.801 kb on + strand, within GFF4147 at 53.801 kb on + strand, within GFF4147 at 53.802 kb on - strand, within GFF4147 at 53.808 kb on - strand, within GFF4147 at 53.808 kb on - strand, within GFF4147 at 53.883 kb on - strand, within GFF4147 at 53.919 kb on - strand at 53.982 kb on + strand at 53.982 kb on + strand at 53.983 kb on - strand at 53.985 kb on - strand at 54.002 kb on + strand at 54.003 kb on - strand at 54.024 kb on + strand at 54.024 kb on + strand at 54.025 kb on - strand at 54.146 kb on + strand at 54.146 kb on + strand at 54.146 kb on + strand at 54.147 kb on - strand at 54.570 kb on - strand, within GFF4148 at 54.601 kb on - strand, within GFF4148
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 51,982 - GFF4145 0.24 -0.3 52,691 - -1.3 52,691 - +0.7 52,692 + -0.8 52,692 + -2.2 53,008 - GFF4146 0.29 -0.4 53,008 - GFF4146 0.29 -0.6 53,253 + GFF4146 0.55 -0.2 53,724 - GFF4147 0.23 -1.2 53,801 + GFF4147 0.50 -0.2 53,801 + GFF4147 0.50 +0.7 53,802 - GFF4147 0.50 +1.6 53,808 - GFF4147 0.52 -0.2 53,808 - GFF4147 0.52 -0.2 53,883 - GFF4147 0.78 +0.5 53,919 - +1.6 53,982 + +1.3 53,982 + +1.6 53,983 - -0.5 53,985 - +1.1 54,002 + -0.2 54,003 - -1.1 54,024 + -0.3 54,024 + -1.4 54,025 - +0.3 54,146 + -0.3 54,146 + +1.4 54,146 + -0.1 54,147 - -0.0 54,570 - GFF4148 0.47 -2.5 54,601 - GFF4148 0.50 +0.2
Or see this region's nucleotide sequence