Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4139 and GFF4140 are separated by 192 nucleotides GFF4140 and GFF4141 overlap by 4 nucleotides GFF4141 and GFF4142 are separated by 27 nucleotides GFF4142 and GFF4143 are separated by 31 nucleotides GFF4143 and GFF4144 are separated by 55 nucleotides
GFF4139 - probable epoxide hydrolase, at 48,716 to 49,645
GFF4139
GFF4140 - no description, at 49,838 to 50,137
GFF4140
GFF4141 - no description, at 50,134 to 50,250
GFF4141
GFF4142 - no description, at 50,278 to 50,634
GFF4142
GFF4143 - Dihydrofolate reductase (EC 1.5.1.3), at 50,666 to 51,238
GFF4143
GFF4144 - Prolyl endopeptidase (EC 3.4.21.26), at 51,294 to 51,686
GFF4144
Position (kb) 50
51 Strain fitness (log2 ratio) -2
-1
0
1 at 49.470 kb on + strand, within GFF4139 at 49.471 kb on - strand, within GFF4139 at 50.111 kb on + strand at 50.249 kb on - strand at 50.294 kb on - strand at 50.329 kb on + strand, within GFF4142 at 50.336 kb on - strand, within GFF4142 at 50.519 kb on - strand, within GFF4142 at 50.603 kb on - strand at 50.603 kb on - strand at 50.633 kb on - strand at 50.759 kb on - strand, within GFF4143 at 51.142 kb on - strand, within GFF4143 at 51.142 kb on - strand, within GFF4143 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.461 kb on - strand, within GFF4144 at 51.461 kb on - strand, within GFF4144 at 51.625 kb on + strand, within GFF4144 at 51.625 kb on + strand, within GFF4144 at 51.625 kb on + strand, within GFF4144 at 51.626 kb on - strand, within GFF4144
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 49,470 + GFF4139 0.81 +0.4 49,471 - GFF4139 0.81 -0.0 50,111 + -0.1 50,249 - -0.1 50,294 - -1.9 50,329 + GFF4142 0.14 -1.2 50,336 - GFF4142 0.16 -0.9 50,519 - GFF4142 0.68 -0.0 50,603 - -0.8 50,603 - -0.6 50,633 - -0.2 50,759 - GFF4143 0.16 -1.0 51,142 - GFF4143 0.83 -0.6 51,142 - GFF4143 0.83 -0.3 51,460 + GFF4144 0.42 -0.5 51,460 + GFF4144 0.42 +0.1 51,460 + GFF4144 0.42 +0.8 51,460 + GFF4144 0.42 -1.0 51,460 + GFF4144 0.42 -0.0 51,461 - GFF4144 0.42 +0.6 51,461 - GFF4144 0.42 -0.7 51,625 + GFF4144 0.84 -1.0 51,625 + GFF4144 0.84 +0.1 51,625 + GFF4144 0.84 -1.6 51,626 - GFF4144 0.84 -0.4
Or see this region's nucleotide sequence