Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4105 and GFF4106 are separated by 25 nucleotides GFF4106 and GFF4107 overlap by 14 nucleotides GFF4107 and GFF4108 are separated by 7 nucleotides GFF4108 and GFF4109 overlap by 4 nucleotides
GFF4105 - Cysteine dioxygenase (EC 1.13.11.20), at 8,839 to 9,480
GFF4105
GFF4106 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 9,506 to 10,369
GFF4106
GFF4107 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 10,356 to 11,159
GFF4107
GFF4108 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 11,167 to 11,913
GFF4108
GFF4109 - Aspartate aminotransferase (EC 2.6.1.1), at 11,910 to 13,148
GFF4109
Position (kb) 10
11
12 Strain fitness (log2 ratio) -1
0
1 at 10.053 kb on + strand, within GFF4106 at 10.054 kb on - strand, within GFF4106 at 10.561 kb on + strand, within GFF4107 at 10.811 kb on - strand, within GFF4107 at 11.645 kb on + strand, within GFF4108 at 11.646 kb on - strand, within GFF4108 at 11.853 kb on - strand at 12.004 kb on + strand at 12.005 kb on - strand at 12.143 kb on - strand, within GFF4109
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 10,053 + GFF4106 0.63 +0.2 10,054 - GFF4106 0.63 -0.5 10,561 + GFF4107 0.25 -1.1 10,811 - GFF4107 0.57 -0.9 11,645 + GFF4108 0.64 +0.1 11,646 - GFF4108 0.64 +0.1 11,853 - +1.1 12,004 + -1.2 12,005 - -1.4 12,143 - GFF4109 0.19 -0.4
Or see this region's nucleotide sequence