Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4085 and GFF4086 are separated by 96 nucleotides GFF4086 and GFF4087 are separated by 33 nucleotides GFF4087 and GFF4088 are separated by 22 nucleotides
GFF4085 - Transcriptional regulator, LysR family, at 298,177 to 299,115
GFF4085
GFF4086 - no description, at 299,212 to 299,664
GFF4086
GFF4087 - Cystathionine beta-lyase (EC 4.4.1.8), at 299,698 to 300,867
GFF4087
GFF4088 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 300,890 to 301,816
GFF4088
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1
2 at 299.116 kb on - strand at 299.116 kb on - strand at 299.117 kb on + strand at 299.118 kb on - strand at 299.118 kb on - strand at 299.118 kb on - strand at 299.118 kb on - strand at 299.161 kb on - strand at 299.174 kb on + strand at 299.175 kb on - strand at 299.175 kb on - strand at 299.587 kb on + strand, within GFF4086 at 299.588 kb on - strand, within GFF4086 at 299.846 kb on - strand, within GFF4087 at 300.011 kb on - strand, within GFF4087 at 300.304 kb on + strand, within GFF4087 at 300.304 kb on + strand, within GFF4087 at 300.304 kb on + strand, within GFF4087 at 300.305 kb on - strand, within GFF4087 at 300.364 kb on + strand, within GFF4087 at 300.364 kb on + strand, within GFF4087 at 300.634 kb on + strand, within GFF4087 at 301.607 kb on + strand, within GFF4088 at 301.608 kb on - strand, within GFF4088 at 301.814 kb on + strand at 301.815 kb on - strand at 301.815 kb on - strand at 301.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 299,116 - +2.4 299,116 - -0.3 299,117 + +0.5 299,118 - -0.3 299,118 - +0.5 299,118 - -0.3 299,118 - -0.1 299,161 - -0.6 299,174 + +0.5 299,175 - -0.8 299,175 - +0.1 299,587 + GFF4086 0.83 -0.2 299,588 - GFF4086 0.83 +0.5 299,846 - GFF4087 0.13 +0.2 300,011 - GFF4087 0.27 -0.0 300,304 + GFF4087 0.52 +0.8 300,304 + GFF4087 0.52 +0.1 300,304 + GFF4087 0.52 +0.0 300,305 - GFF4087 0.52 -2.6 300,364 + GFF4087 0.57 +0.1 300,364 + GFF4087 0.57 +0.9 300,634 + GFF4087 0.80 +0.6 301,607 + GFF4088 0.77 +0.7 301,608 - GFF4088 0.77 -0.7 301,814 + -0.0 301,815 - -0.5 301,815 - -0.3 301,860 - -0.1
Or see this region's nucleotide sequence