Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4034 and GFF4035 are separated by 94 nucleotides GFF4035 and GFF4036 are separated by 380 nucleotides GFF4036 and GFF4037 overlap by 4 nucleotides GFF4037 and GFF4038 are separated by 17 nucleotides
GFF4034 - Cobalt/zinc/cadmium resistance protein CzcD, at 242,840 to 243,655
GFF4034
GFF4035 - no description, at 243,750 to 243,875
GFF4035
GFF4036 - hypothetical protein, at 244,256 to 244,594
GFF4036
GFF4037 - CzcABC family efflux RND transporter, transmembrane protein, at 244,591 to 247,716
GFF4037
GFF4038 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family, at 247,734 to 248,951
GFF4038
Position (kb) 244
245
246
247
248 Strain fitness (log2 ratio) -1
0
1 at 243.722 kb on + strand at 243.723 kb on - strand at 243.723 kb on - strand at 243.723 kb on - strand at 243.953 kb on + strand at 244.293 kb on + strand, within GFF4036 at 244.293 kb on + strand, within GFF4036 at 244.294 kb on - strand, within GFF4036 at 244.322 kb on - strand, within GFF4036 at 244.392 kb on + strand, within GFF4036 at 244.392 kb on + strand, within GFF4036 at 244.665 kb on - strand at 244.665 kb on - strand at 245.072 kb on + strand, within GFF4037 at 245.073 kb on - strand, within GFF4037 at 245.273 kb on + strand, within GFF4037 at 245.273 kb on + strand, within GFF4037 at 245.679 kb on - strand, within GFF4037 at 245.873 kb on + strand, within GFF4037 at 245.873 kb on + strand, within GFF4037 at 245.874 kb on - strand, within GFF4037 at 245.874 kb on - strand, within GFF4037 at 246.296 kb on + strand, within GFF4037 at 246.296 kb on + strand, within GFF4037 at 246.944 kb on + strand, within GFF4037 at 246.945 kb on - strand, within GFF4037 at 247.343 kb on + strand, within GFF4037 at 247.406 kb on + strand at 247.567 kb on - strand at 247.568 kb on + strand at 247.569 kb on - strand at 247.572 kb on + strand at 247.573 kb on - strand at 247.700 kb on - strand at 247.783 kb on + strand at 247.783 kb on + strand at 247.783 kb on + strand at 247.883 kb on - strand, within GFF4038 at 248.101 kb on + strand, within GFF4038 at 248.438 kb on - strand, within GFF4038 at 248.488 kb on + strand, within GFF4038 at 248.489 kb on - strand, within GFF4038
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 243,722 + -0.6 243,723 - -0.1 243,723 - -0.3 243,723 - +0.2 243,953 + -1.7 244,293 + GFF4036 0.11 -1.0 244,293 + GFF4036 0.11 -0.8 244,294 - GFF4036 0.11 +0.0 244,322 - GFF4036 0.19 +0.2 244,392 + GFF4036 0.40 -0.4 244,392 + GFF4036 0.40 -0.7 244,665 - +0.1 244,665 - -0.4 245,072 + GFF4037 0.15 -0.3 245,073 - GFF4037 0.15 -0.0 245,273 + GFF4037 0.22 +0.1 245,273 + GFF4037 0.22 +0.7 245,679 - GFF4037 0.35 +1.0 245,873 + GFF4037 0.41 -0.4 245,873 + GFF4037 0.41 +0.3 245,874 - GFF4037 0.41 -0.0 245,874 - GFF4037 0.41 +0.6 246,296 + GFF4037 0.55 -0.1 246,296 + GFF4037 0.55 +0.7 246,944 + GFF4037 0.75 -0.5 246,945 - GFF4037 0.75 -0.4 247,343 + GFF4037 0.88 +0.4 247,406 + -0.7 247,567 - +1.2 247,568 + -0.5 247,569 - -0.6 247,572 + +0.4 247,573 - -1.1 247,700 - -1.1 247,783 + -0.9 247,783 + -0.1 247,783 + -0.6 247,883 - GFF4038 0.12 +0.7 248,101 + GFF4038 0.30 -0.7 248,438 - GFF4038 0.58 +1.4 248,488 + GFF4038 0.62 +0.1 248,489 - GFF4038 0.62 -0.1
Or see this region's nucleotide sequence