Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3974 and GFF3975 are separated by 16 nucleotides GFF3975 and GFF3976 overlap by 4 nucleotides GFF3976 and GFF3977 are separated by 49 nucleotides
GFF3974 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 177,317 to 178,570
GFF3974
GFF3975 - Metal-dependent hydrolase, at 178,587 to 179,399
GFF3975
GFF3976 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 179,396 to 180,130
GFF3976
GFF3977 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 180,180 to 181,346
GFF3977
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.485 kb on - strand at 178.968 kb on + strand, within GFF3975 at 178.968 kb on + strand, within GFF3975 at 179.212 kb on - strand, within GFF3975 at 179.212 kb on - strand, within GFF3975 at 179.230 kb on - strand, within GFF3975 at 179.241 kb on + strand, within GFF3975 at 179.241 kb on + strand, within GFF3975 at 179.242 kb on - strand, within GFF3975 at 179.242 kb on - strand, within GFF3975 at 179.242 kb on - strand, within GFF3975 at 179.244 kb on + strand, within GFF3975 at 179.244 kb on + strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.245 kb on - strand, within GFF3975 at 179.825 kb on + strand, within GFF3976 at 179.825 kb on + strand, within GFF3976 at 179.825 kb on + strand, within GFF3976 at 179.863 kb on + strand, within GFF3976 at 179.943 kb on - strand, within GFF3976 at 180.089 kb on + strand at 180.090 kb on - strand at 180.090 kb on - strand at 180.090 kb on - strand at 180.090 kb on - strand at 180.325 kb on - strand, within GFF3977 at 180.354 kb on + strand, within GFF3977 at 180.355 kb on - strand, within GFF3977 at 180.708 kb on + strand, within GFF3977 at 180.898 kb on - strand, within GFF3977 at 180.913 kb on - strand, within GFF3977 at 180.913 kb on - strand, within GFF3977 at 181.111 kb on - strand, within GFF3977 at 181.111 kb on - strand, within GFF3977
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 178,485 - -1.6 178,968 + GFF3975 0.47 -0.8 178,968 + GFF3975 0.47 -0.2 179,212 - GFF3975 0.77 -0.8 179,212 - GFF3975 0.77 +0.8 179,230 - GFF3975 0.79 -1.2 179,241 + GFF3975 0.80 +0.2 179,241 + GFF3975 0.80 -0.0 179,242 - GFF3975 0.81 -1.0 179,242 - GFF3975 0.81 -1.1 179,242 - GFF3975 0.81 -2.4 179,244 + GFF3975 0.81 -0.8 179,244 + GFF3975 0.81 -2.2 179,245 - GFF3975 0.81 +0.5 179,245 - GFF3975 0.81 -0.7 179,245 - GFF3975 0.81 -0.8 179,245 - GFF3975 0.81 -0.3 179,825 + GFF3976 0.58 +2.0 179,825 + GFF3976 0.58 +0.0 179,825 + GFF3976 0.58 -0.1 179,863 + GFF3976 0.64 -0.2 179,943 - GFF3976 0.74 +0.6 180,089 + -0.6 180,090 - +0.7 180,090 - +0.1 180,090 - -0.0 180,090 - -1.0 180,325 - GFF3977 0.12 +0.1 180,354 + GFF3977 0.15 -1.1 180,355 - GFF3977 0.15 -0.7 180,708 + GFF3977 0.45 +0.5 180,898 - GFF3977 0.62 -0.5 180,913 - GFF3977 0.63 +0.8 180,913 - GFF3977 0.63 -0.1 181,111 - GFF3977 0.80 -0.6 181,111 - GFF3977 0.80 -0.5
Or see this region's nucleotide sequence