Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3950 and GFF3951 are separated by 16 nucleotides GFF3951 and GFF3952 are separated by 109 nucleotides GFF3952 and GFF3953 are separated by 168 nucleotides GFF3953 and GFF3954 are separated by 52 nucleotides
GFF3950 - 16S rRNA processing protein RimM, at 152,021 to 152,575
GFF3950
GFF3951 - tRNA (guanine(37)-N(1))-methyltransferase (EC 2.1.1.228), at 152,592 to 153,338
GFF3951
GFF3952 - LSU ribosomal protein L19p, at 153,448 to 153,828
GFF3952
GFF3953 - Uncharacterized Nudix hydrolase NudL, at 153,997 to 154,716
GFF3953
GFF3954 - Similar to cobalamin biosynthesis protein CbiB, at 154,769 to 155,770
GFF3954
Position (kb) 153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 153.334 kb on + strand at 153.334 kb on + strand at 153.334 kb on + strand at 153.334 kb on + strand at 153.745 kb on + strand, within GFF3952 at 153.745 kb on + strand, within GFF3952 at 153.746 kb on - strand, within GFF3952 at 153.746 kb on - strand, within GFF3952 at 153.746 kb on - strand, within GFF3952 at 153.746 kb on - strand, within GFF3952 at 153.746 kb on - strand, within GFF3952 at 153.746 kb on - strand, within GFF3952 at 153.748 kb on + strand, within GFF3952 at 153.748 kb on + strand, within GFF3952 at 153.749 kb on - strand, within GFF3952 at 153.749 kb on - strand, within GFF3952 at 153.749 kb on - strand, within GFF3952 at 153.780 kb on + strand, within GFF3952 at 153.780 kb on + strand, within GFF3952 at 153.780 kb on + strand, within GFF3952 at 153.826 kb on + strand at 153.826 kb on + strand at 153.827 kb on - strand at 153.827 kb on - strand at 153.829 kb on + strand at 153.829 kb on + strand at 153.829 kb on + strand at 153.829 kb on + strand at 153.829 kb on + strand at 153.829 kb on + strand at 153.829 kb on + strand at 153.829 kb on + strand at 153.830 kb on - strand at 153.830 kb on - strand at 153.830 kb on - strand at 153.843 kb on - strand at 153.928 kb on + strand at 153.929 kb on - strand at 153.935 kb on + strand at 153.935 kb on + strand at 153.935 kb on + strand at 153.935 kb on + strand at 153.936 kb on - strand at 153.936 kb on - strand at 153.936 kb on - strand at 153.936 kb on - strand at 153.936 kb on - strand at 153.936 kb on - strand at 153.936 kb on - strand at 153.945 kb on - strand at 153.945 kb on - strand at 154.284 kb on + strand, within GFF3953 at 154.284 kb on + strand, within GFF3953 at 154.284 kb on + strand, within GFF3953 at 154.284 kb on + strand, within GFF3953 at 154.284 kb on + strand, within GFF3953 at 154.285 kb on - strand, within GFF3953 at 154.285 kb on - strand, within GFF3953 at 154.285 kb on - strand, within GFF3953 at 154.438 kb on + strand, within GFF3953 at 154.438 kb on + strand, within GFF3953 at 154.438 kb on + strand, within GFF3953 at 154.439 kb on - strand, within GFF3953 at 154.439 kb on - strand, within GFF3953 at 154.516 kb on + strand, within GFF3953 at 154.621 kb on + strand, within GFF3953 at 154.621 kb on + strand, within GFF3953 at 154.621 kb on + strand, within GFF3953 at 154.621 kb on + strand, within GFF3953 at 154.622 kb on - strand, within GFF3953 at 154.697 kb on - strand at 154.697 kb on - strand at 154.718 kb on + strand at 154.718 kb on + strand at 154.718 kb on + strand at 154.718 kb on + strand at 154.718 kb on + strand at 154.719 kb on - strand at 154.719 kb on - strand at 154.757 kb on + strand at 154.757 kb on + strand at 154.757 kb on + strand at 154.757 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 153,334 + -0.7 153,334 + -1.1 153,334 + -1.6 153,334 + -0.4 153,745 + GFF3952 0.78 -0.5 153,745 + GFF3952 0.78 -0.8 153,746 - GFF3952 0.78 -0.1 153,746 - GFF3952 0.78 +1.5 153,746 - GFF3952 0.78 -2.0 153,746 - GFF3952 0.78 +1.5 153,746 - GFF3952 0.78 +0.5 153,746 - GFF3952 0.78 -0.8 153,748 + GFF3952 0.79 -0.1 153,748 + GFF3952 0.79 -0.1 153,749 - GFF3952 0.79 -2.0 153,749 - GFF3952 0.79 -0.7 153,749 - GFF3952 0.79 +1.5 153,780 + GFF3952 0.87 -0.8 153,780 + GFF3952 0.87 -1.1 153,780 + GFF3952 0.87 +1.9 153,826 + -1.2 153,826 + -0.4 153,827 - +1.5 153,827 - +0.5 153,829 + -0.1 153,829 + -0.2 153,829 + -0.3 153,829 + +0.7 153,829 + -2.5 153,829 + -0.3 153,829 + +0.2 153,829 + +0.6 153,830 - -1.8 153,830 - -2.6 153,830 - +0.8 153,843 - -0.5 153,928 + +0.2 153,929 - -0.6 153,935 + +0.1 153,935 + -0.1 153,935 + -1.3 153,935 + -1.8 153,936 - -0.1 153,936 - -0.1 153,936 - +0.2 153,936 - -0.7 153,936 - +0.8 153,936 - -0.2 153,936 - +0.1 153,945 - -0.1 153,945 - -0.1 154,284 + GFF3953 0.40 +1.9 154,284 + GFF3953 0.40 +0.4 154,284 + GFF3953 0.40 -0.9 154,284 + GFF3953 0.40 -1.5 154,284 + GFF3953 0.40 -0.2 154,285 - GFF3953 0.40 -1.2 154,285 - GFF3953 0.40 -0.6 154,285 - GFF3953 0.40 -1.5 154,438 + GFF3953 0.61 +1.0 154,438 + GFF3953 0.61 -0.1 154,438 + GFF3953 0.61 -0.2 154,439 - GFF3953 0.61 -0.2 154,439 - GFF3953 0.61 -1.7 154,516 + GFF3953 0.72 -0.7 154,621 + GFF3953 0.87 -1.1 154,621 + GFF3953 0.87 +0.4 154,621 + GFF3953 0.87 -0.1 154,621 + GFF3953 0.87 -0.3 154,622 - GFF3953 0.87 -0.7 154,697 - -0.6 154,697 - -0.6 154,718 + -0.8 154,718 + -0.7 154,718 + -0.9 154,718 + -0.3 154,718 + -0.3 154,719 - -1.0 154,719 - +0.5 154,757 + -1.6 154,757 + +0.2 154,757 + -1.3 154,757 + +0.2
Or see this region's nucleotide sequence