Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3923 and GFF3924 are separated by 77 nucleotides GFF3924 and GFF3925 overlap by 4 nucleotides GFF3925 and GFF3926 are separated by 28 nucleotides GFF3926 and GFF3927 overlap by 4 nucleotides
GFF3923 - Kynurenine formamidase, bacterial (EC 3.5.1.9), at 129,375 to 130,025
GFF3923
GFF3924 - Ferredoxin, at 130,103 to 130,417
GFF3924
GFF3925 - hypothetical protein, at 130,414 to 130,971
GFF3925
GFF3926 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 131,000 to 131,962
GFF3926
GFF3927 - N-acetylornithine aminotransferase (EC 2.6.1.11), at 131,959 to 133,167
GFF3927
Position (kb) 130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 129.457 kb on + strand, within GFF3923 at 129.457 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.676 kb on + strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.677 kb on - strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.680 kb on + strand, within GFF3923 at 129.681 kb on - strand, within GFF3923 at 129.681 kb on - strand, within GFF3923 at 129.681 kb on - strand, within GFF3923 at 129.835 kb on + strand, within GFF3923 at 129.836 kb on - strand, within GFF3923 at 129.836 kb on - strand, within GFF3923 at 129.836 kb on - strand, within GFF3923 at 129.836 kb on - strand, within GFF3923 at 129.836 kb on - strand, within GFF3923 at 129.940 kb on + strand, within GFF3923 at 129.941 kb on - strand, within GFF3923 at 129.941 kb on - strand, within GFF3923 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.206 kb on + strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.207 kb on - strand, within GFF3924 at 130.378 kb on - strand, within GFF3924 at 130.378 kb on - strand, within GFF3924 at 130.500 kb on - strand, within GFF3925 at 130.500 kb on - strand, within GFF3925 at 130.500 kb on - strand, within GFF3925 at 130.671 kb on - strand, within GFF3925
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 129,457 + GFF3923 0.13 +0.2 129,457 + GFF3923 0.13 +0.3 129,676 + GFF3923 0.46 -1.1 129,676 + GFF3923 0.46 -0.5 129,676 + GFF3923 0.46 -0.2 129,676 + GFF3923 0.46 +0.3 129,676 + GFF3923 0.46 +0.1 129,676 + GFF3923 0.46 -0.1 129,676 + GFF3923 0.46 +0.5 129,676 + GFF3923 0.46 -0.5 129,676 + GFF3923 0.46 -0.6 129,676 + GFF3923 0.46 +1.5 129,676 + GFF3923 0.46 -0.1 129,677 - GFF3923 0.46 +0.3 129,677 - GFF3923 0.46 -2.6 129,677 - GFF3923 0.46 -0.2 129,677 - GFF3923 0.46 -0.6 129,677 - GFF3923 0.46 -0.4 129,677 - GFF3923 0.46 -1.1 129,677 - GFF3923 0.46 -0.4 129,677 - GFF3923 0.46 -0.6 129,680 + GFF3923 0.47 -0.2 129,680 + GFF3923 0.47 +0.8 129,680 + GFF3923 0.47 -0.1 129,680 + GFF3923 0.47 -1.3 129,680 + GFF3923 0.47 +0.1 129,680 + GFF3923 0.47 +3.5 129,680 + GFF3923 0.47 -0.2 129,681 - GFF3923 0.47 -0.2 129,681 - GFF3923 0.47 +0.4 129,681 - GFF3923 0.47 -0.7 129,835 + GFF3923 0.71 -0.1 129,836 - GFF3923 0.71 -0.5 129,836 - GFF3923 0.71 -0.2 129,836 - GFF3923 0.71 -0.4 129,836 - GFF3923 0.71 -0.9 129,836 - GFF3923 0.71 +0.5 129,940 + GFF3923 0.87 +2.1 129,941 - GFF3923 0.87 -3.4 129,941 - GFF3923 0.87 -0.5 130,206 + GFF3924 0.33 +0.9 130,206 + GFF3924 0.33 -0.6 130,206 + GFF3924 0.33 +1.0 130,206 + GFF3924 0.33 -1.4 130,206 + GFF3924 0.33 -0.3 130,206 + GFF3924 0.33 +0.2 130,206 + GFF3924 0.33 -0.4 130,206 + GFF3924 0.33 -1.7 130,207 - GFF3924 0.33 -1.5 130,207 - GFF3924 0.33 -1.0 130,207 - GFF3924 0.33 -1.2 130,207 - GFF3924 0.33 -0.6 130,207 - GFF3924 0.33 -1.0 130,207 - GFF3924 0.33 +0.7 130,207 - GFF3924 0.33 -0.4 130,207 - GFF3924 0.33 +0.4 130,207 - GFF3924 0.33 -0.4 130,207 - GFF3924 0.33 +2.5 130,207 - GFF3924 0.33 +0.1 130,207 - GFF3924 0.33 -1.5 130,378 - GFF3924 0.87 +0.5 130,378 - GFF3924 0.87 -1.0 130,500 - GFF3925 0.15 +0.3 130,500 - GFF3925 0.15 -0.6 130,500 - GFF3925 0.15 +1.9 130,671 - GFF3925 0.46 +0.1
Or see this region's nucleotide sequence