Strain Fitness in Variovorax sp. SCN45 around GFF3835

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
24,716	+		GFF3833	0.90	-0.3
24,947	+				-0.4
24,947	+				-1.1
24,948	-				+0.1
24,948	-				+0.9
25,012	+				+1.8
25,013	-				+0.2
25,018	+				+0.8
25,018	+				-0.1
25,018	+				-1.0
25,019	-				-1.1
25,019	-				+0.3
25,019	-				+1.8
25,019	-				+0.3
25,380	-		GFF3834	0.68	-0.6
25,468	+		GFF3834	0.84	-0.5
25,688	+		GFF3835	0.34	+0.6
25,688	+		GFF3835	0.34	-0.0
25,689	-		GFF3835	0.34	+1.7
25,689	-		GFF3835	0.34	-0.1
25,689	-		GFF3835	0.34	+0.4
26,001	-				-0.1
26,281	+				-0.8
26,281	+				-0.5
26,308	+				-0.3
26,308	+				-0.8
26,308	-				+0.5
26,309	-				+0.2
26,309	-				-0.0
26,309	-				-0.2
26,323	+				-0.0
26,323	+				+0.8
26,323	+				+0.2
26,324	-				-0.3
26,324	-				+0.2
26,345	-				-0.4
26,485	+				-1.1
26,486	-				+0.6
26,486	-				-1.5
26,530	+				-0.1
26,531	-				-0.5