Strain Fitness in Variovorax sp. SCN45 around GFF3830

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
20,012	-		GFF3828	0.87	-0.6
20,012	-		GFF3828	0.87	+0.2
20,079	+		GFF3828	0.90	-0.7
20,079	+		GFF3828	0.90	-1.1
20,079	+		GFF3828	0.90	-0.6
20,080	-		GFF3828	0.90	-1.1
20,135	+				-0.1
20,135	+				-0.2
20,136	-				-0.2
20,136	-				+0.1
20,136	-				+0.5
20,136	-				+1.0
20,397	+				+0.1
20,397	+				+0.9
20,397	+				-0.6
20,397	+				-0.2
20,398	-				-0.0
20,426	-				-1.0
20,500	+		GFF3829	0.20	+0.3
20,500	+		GFF3829	0.20	-0.7
20,500	+		GFF3829	0.20	+1.1
20,501	-		GFF3829	0.21	-1.3
20,755	+		GFF3829	0.85	+0.8
20,755	+		GFF3829	0.85	-1.6
20,755	+		GFF3829	0.85	-0.6
20,755	+		GFF3829	0.85	+1.3
20,755	+		GFF3829	0.85	+0.0
20,755	+		GFF3829	0.85	+0.5
20,756	-		GFF3829	0.85	+0.1
20,756	-		GFF3829	0.85	+1.2
20,756	-		GFF3829	0.85	-0.9
20,776	+				-0.7
20,777	-				+1.0
20,777	-				-0.9
21,070	+		GFF3830	0.21	+2.0
21,103	+		GFF3830	0.23	-0.5
21,103	+		GFF3830	0.23	+0.3
21,103	+		GFF3830	0.23	+0.8
21,104	-		GFF3830	0.24	+0.1
21,392	-		GFF3830	0.46	+0.2
21,392	-		GFF3830	0.46	+0.4
21,392	-		GFF3830	0.46	+0.4
21,619	+		GFF3830	0.65	+1.5
21,619	+		GFF3830	0.65	-1.5
21,619	+		GFF3830	0.65	+0.7
21,620	-		GFF3830	0.65	+1.2
21,713	-		GFF3830	0.72	-0.8
21,745	+		GFF3830	0.75	+0.6
21,745	+		GFF3830	0.75	-0.7
21,746	-		GFF3830	0.75	-1.5
21,890	-		GFF3830	0.86	-0.6
21,912	+		GFF3830	0.88	+1.8
22,311	+		GFF3831	0.45	-0.1
22,311	+		GFF3831	0.45	+0.2
22,312	-		GFF3831	0.46	-2.5
22,312	-		GFF3831	0.46	-0.6
22,312	-		GFF3831	0.46	+0.5
22,312	-		GFF3831	0.46	-0.1
22,312	-		GFF3831	0.46	-1.7
22,356	+		GFF3831	0.54	-2.2
22,357	-		GFF3831	0.54	-0.8
22,368	+		GFF3831	0.56	+0.2
22,368	+		GFF3831	0.56	-0.1
22,369	-		GFF3831	0.56	+0.1
22,369	-		GFF3831	0.56	+0.0
22,374	+		GFF3831	0.57	-0.2
22,410	+		GFF3831	0.64	-1.8
22,411	-		GFF3831	0.64	-1.1
22,411	-		GFF3831	0.64	-0.6
22,506	+		GFF3831	0.82	-0.7
22,506	+		GFF3831	0.82	-2.7
22,506	+		GFF3831	0.82	-0.2
22,506	+		GFF3831	0.82	+0.1
22,506	+		GFF3831	0.82	-2.2
22,506	+		GFF3831	0.82	+0.5
22,507	-		GFF3831	0.83	+0.3
22,515	+		GFF3831	0.84	+0.2
22,515	+		GFF3831	0.84	-0.1
22,515	+		GFF3831	0.84	+0.4
22,515	+		GFF3831	0.84	+1.2
22,515	+		GFF3831	0.84	-2.7
22,515	+		GFF3831	0.84	+0.1
22,516	-		GFF3831	0.84	-2.1
22,516	-		GFF3831	0.84	-0.0
22,516	-		GFF3831	0.84	-0.8
22,516	-		GFF3831	0.84	-0.4