Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3825 and GFF3826 overlap by 4 nucleotides GFF3826 and GFF3827 overlap by 4 nucleotides
GFF3825 - Autolysin sensor kinase (EC 2.7.3.-), at 14,791 to 15,789
GFF3825
GFF3826 - Response regulator receiver:LytTr DNA-binding region, at 15,786 to 16,541
GFF3826
GFF3827 - UPF0118 membrane protein SMc00793, at 16,538 to 17,818
GFF3827
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.026 kb on - strand, within GFF3825 at 15.026 kb on - strand, within GFF3825 at 15.064 kb on + strand, within GFF3825 at 15.064 kb on + strand, within GFF3825 at 15.064 kb on + strand, within GFF3825 at 15.064 kb on + strand, within GFF3825 at 15.065 kb on - strand, within GFF3825 at 15.065 kb on - strand, within GFF3825 at 15.406 kb on + strand, within GFF3825 at 15.714 kb on + strand at 15.715 kb on - strand at 15.715 kb on - strand at 15.715 kb on - strand at 15.715 kb on - strand at 16.099 kb on - strand, within GFF3826 at 16.260 kb on + strand, within GFF3826 at 16.260 kb on + strand, within GFF3826 at 16.260 kb on + strand, within GFF3826 at 16.261 kb on - strand, within GFF3826 at 16.261 kb on - strand, within GFF3826 at 16.275 kb on + strand, within GFF3826 at 16.275 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.422 kb on + strand, within GFF3826 at 16.423 kb on - strand, within GFF3826 at 16.423 kb on - strand, within GFF3826 at 16.423 kb on - strand, within GFF3826 at 16.848 kb on - strand, within GFF3827 at 16.848 kb on - strand, within GFF3827 at 16.955 kb on + strand, within GFF3827 at 17.186 kb on + strand, within GFF3827 at 17.187 kb on - strand, within GFF3827 at 17.255 kb on + strand, within GFF3827 at 17.256 kb on - strand, within GFF3827 at 17.256 kb on - strand, within GFF3827 at 17.256 kb on - strand, within GFF3827 at 17.331 kb on - strand, within GFF3827 at 17.378 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 15,026 - GFF3825 0.24 -0.4 15,026 - GFF3825 0.24 +0.2 15,064 + GFF3825 0.27 -0.5 15,064 + GFF3825 0.27 +0.5 15,064 + GFF3825 0.27 -1.2 15,064 + GFF3825 0.27 -2.2 15,065 - GFF3825 0.27 -1.9 15,065 - GFF3825 0.27 -1.4 15,406 + GFF3825 0.62 -0.9 15,714 + +1.2 15,715 - -0.1 15,715 - +0.1 15,715 - -1.4 15,715 - -0.5 16,099 - GFF3826 0.41 +0.3 16,260 + GFF3826 0.63 -1.1 16,260 + GFF3826 0.63 -1.3 16,260 + GFF3826 0.63 -0.1 16,261 - GFF3826 0.63 -0.9 16,261 - GFF3826 0.63 -0.8 16,275 + GFF3826 0.65 -1.1 16,275 + GFF3826 0.65 -1.2 16,281 + GFF3826 0.65 -1.5 16,281 + GFF3826 0.65 -0.7 16,281 + GFF3826 0.65 -0.6 16,281 + GFF3826 0.65 -0.9 16,281 + GFF3826 0.65 -0.8 16,282 - GFF3826 0.66 -1.0 16,282 - GFF3826 0.66 -0.8 16,282 - GFF3826 0.66 -1.8 16,282 - GFF3826 0.66 -0.2 16,282 - GFF3826 0.66 +0.5 16,282 - GFF3826 0.66 -0.4 16,422 + GFF3826 0.84 -1.9 16,423 - GFF3826 0.84 +0.6 16,423 - GFF3826 0.84 +0.1 16,423 - GFF3826 0.84 -1.0 16,848 - GFF3827 0.24 +0.3 16,848 - GFF3827 0.24 +0.5 16,955 + GFF3827 0.33 -0.1 17,186 + GFF3827 0.51 -0.6 17,187 - GFF3827 0.51 -1.8 17,255 + GFF3827 0.56 -0.2 17,256 - GFF3827 0.56 +0.2 17,256 - GFF3827 0.56 +1.8 17,256 - GFF3827 0.56 -0.2 17,331 - GFF3827 0.62 -0.0 17,378 + GFF3827 0.66 -1.1 17,504 + GFF3827 0.75 -1.0 17,504 + GFF3827 0.75 +0.1 17,504 + GFF3827 0.75 -0.6 17,504 + GFF3827 0.75 -0.7 17,504 + GFF3827 0.75 -0.3 17,504 + GFF3827 0.75 +1.1 17,505 - GFF3827 0.75 +0.5 17,505 - GFF3827 0.75 +0.5 17,505 - GFF3827 0.75 -0.8 17,505 - GFF3827 0.75 -0.1 17,505 - GFF3827 0.75 -0.1
Or see this region's nucleotide sequence