Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3744 and GFF3745 are separated by 25 nucleotides GFF3745 and GFF3746 are separated by 10 nucleotides GFF3746 and GFF3747 overlap by 4 nucleotides GFF3747 and GFF3748 are separated by 7 nucleotides
GFF3744 - Pyridoxal phosphate-containing protein YggS, at 240,346 to 241,047
GFF3744
GFF3745 - Uncharacterized UPF0721 integral membrane protein, at 241,073 to 241,813
GFF3745
GFF3746 - Probable NADH dehydrogenase/NAD(P)H nitroreductase, at 241,824 to 242,414
GFF3746
GFF3747 - putative esterase, at 242,411 to 243,253
GFF3747
GFF3748 - KEGG: dihydrodipicolinate synthase , at 243,261 to 244,118
GFF3748
Position (kb) 241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 241.173 kb on + strand, within GFF3745 at 241.173 kb on + strand, within GFF3745 at 241.174 kb on - strand, within GFF3745 at 241.242 kb on + strand, within GFF3745 at 241.242 kb on + strand, within GFF3745 at 241.243 kb on - strand, within GFF3745 at 241.243 kb on - strand, within GFF3745 at 241.372 kb on - strand, within GFF3745 at 241.380 kb on + strand, within GFF3745 at 241.380 kb on + strand, within GFF3745 at 241.380 kb on + strand, within GFF3745 at 241.650 kb on + strand, within GFF3745 at 241.650 kb on + strand, within GFF3745 at 241.651 kb on - strand, within GFF3745 at 241.651 kb on - strand, within GFF3745 at 241.651 kb on - strand, within GFF3745 at 242.024 kb on - strand, within GFF3746 at 242.314 kb on + strand, within GFF3746 at 242.314 kb on + strand, within GFF3746 at 242.315 kb on - strand, within GFF3746 at 242.315 kb on - strand, within GFF3746 at 242.315 kb on - strand, within GFF3746 at 242.571 kb on + strand, within GFF3747 at 242.571 kb on + strand, within GFF3747 at 242.571 kb on + strand, within GFF3747 at 242.572 kb on - strand, within GFF3747 at 242.733 kb on + strand, within GFF3747 at 242.734 kb on - strand, within GFF3747 at 242.937 kb on + strand, within GFF3747 at 242.937 kb on + strand, within GFF3747 at 242.937 kb on + strand, within GFF3747 at 242.938 kb on - strand, within GFF3747 at 242.959 kb on - strand, within GFF3747 at 243.022 kb on - strand, within GFF3747 at 243.022 kb on - strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.036 kb on + strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.037 kb on - strand, within GFF3747 at 243.105 kb on + strand, within GFF3747 at 243.183 kb on + strand at 243.184 kb on - strand at 243.184 kb on - strand at 243.210 kb on + strand at 243.210 kb on + strand at 243.210 kb on + strand at 243.210 kb on + strand at 243.211 kb on - strand at 243.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 241,173 + GFF3745 0.13 -0.3 241,173 + GFF3745 0.13 -0.8 241,174 - GFF3745 0.14 -0.3 241,242 + GFF3745 0.23 +0.2 241,242 + GFF3745 0.23 +0.1 241,243 - GFF3745 0.23 +0.1 241,243 - GFF3745 0.23 -0.5 241,372 - GFF3745 0.40 -0.1 241,380 + GFF3745 0.41 -0.1 241,380 + GFF3745 0.41 +0.7 241,380 + GFF3745 0.41 -1.6 241,650 + GFF3745 0.78 +0.4 241,650 + GFF3745 0.78 -0.8 241,651 - GFF3745 0.78 -0.2 241,651 - GFF3745 0.78 +0.1 241,651 - GFF3745 0.78 -0.9 242,024 - GFF3746 0.34 +0.4 242,314 + GFF3746 0.83 +0.0 242,314 + GFF3746 0.83 +0.6 242,315 - GFF3746 0.83 +0.5 242,315 - GFF3746 0.83 -0.5 242,315 - GFF3746 0.83 +0.7 242,571 + GFF3747 0.19 -0.1 242,571 + GFF3747 0.19 -0.2 242,571 + GFF3747 0.19 +0.5 242,572 - GFF3747 0.19 -1.8 242,733 + GFF3747 0.38 +1.6 242,734 - GFF3747 0.38 -0.1 242,937 + GFF3747 0.62 +0.0 242,937 + GFF3747 0.62 +0.6 242,937 + GFF3747 0.62 -0.1 242,938 - GFF3747 0.63 -3.0 242,959 - GFF3747 0.65 -0.0 243,022 - GFF3747 0.72 -0.4 243,022 - GFF3747 0.72 +0.6 243,036 + GFF3747 0.74 -1.4 243,036 + GFF3747 0.74 +1.2 243,036 + GFF3747 0.74 -1.1 243,036 + GFF3747 0.74 +0.4 243,036 + GFF3747 0.74 +0.1 243,036 + GFF3747 0.74 -0.5 243,036 + GFF3747 0.74 -0.2 243,036 + GFF3747 0.74 -0.8 243,036 + GFF3747 0.74 -1.8 243,037 - GFF3747 0.74 -0.5 243,037 - GFF3747 0.74 +0.5 243,037 - GFF3747 0.74 +0.9 243,037 - GFF3747 0.74 +0.6 243,037 - GFF3747 0.74 -0.9 243,037 - GFF3747 0.74 -0.3 243,037 - GFF3747 0.74 -0.0 243,037 - GFF3747 0.74 +0.0 243,037 - GFF3747 0.74 -0.4 243,037 - GFF3747 0.74 +0.3 243,037 - GFF3747 0.74 -0.3 243,037 - GFF3747 0.74 +1.1 243,037 - GFF3747 0.74 -0.0 243,037 - GFF3747 0.74 -0.5 243,105 + GFF3747 0.82 -0.9 243,183 + -0.7 243,184 - +0.0 243,184 - -2.1 243,210 + +0.1 243,210 + -0.1 243,210 + -0.4 243,210 + +0.5 243,211 - -0.6 243,211 - -1.3
Or see this region's nucleotide sequence