Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3692 and GFF3693 are separated by 1 nucleotides GFF3693 and GFF3694 are separated by 25 nucleotides GFF3694 and GFF3695 are separated by 81 nucleotides
GFF3692 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 191,731 to 192,693
GFF3692
GFF3693 - Oxidoreductase, at 192,695 to 193,858
GFF3693
GFF3694 - Phosphoesterase, PA-phosphatase related, at 193,884 to 194,597
GFF3694
GFF3695 - hypothetical protein, at 194,679 to 195,197
GFF3695
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 191.873 kb on - strand, within GFF3692 at 191.873 kb on - strand, within GFF3692 at 192.077 kb on - strand, within GFF3692 at 192.077 kb on - strand, within GFF3692 at 192.127 kb on + strand, within GFF3692 at 192.127 kb on + strand, within GFF3692 at 192.127 kb on + strand, within GFF3692 at 192.128 kb on - strand, within GFF3692 at 192.128 kb on - strand, within GFF3692 at 192.172 kb on + strand, within GFF3692 at 192.173 kb on - strand, within GFF3692 at 192.173 kb on - strand, within GFF3692 at 192.173 kb on - strand, within GFF3692 at 192.173 kb on - strand, within GFF3692 at 192.310 kb on + strand, within GFF3692 at 192.310 kb on + strand, within GFF3692 at 192.311 kb on - strand, within GFF3692 at 192.311 kb on - strand, within GFF3692 at 192.311 kb on - strand, within GFF3692 at 192.356 kb on - strand, within GFF3692 at 192.544 kb on + strand, within GFF3692 at 192.544 kb on + strand, within GFF3692 at 192.545 kb on - strand, within GFF3692 at 192.563 kb on - strand, within GFF3692 at 192.563 kb on - strand, within GFF3692 at 192.670 kb on + strand at 192.671 kb on - strand at 192.671 kb on - strand at 192.671 kb on - strand at 192.671 kb on - strand at 192.671 kb on - strand at 193.115 kb on + strand, within GFF3693 at 193.115 kb on + strand, within GFF3693 at 193.116 kb on - strand, within GFF3693 at 193.116 kb on - strand, within GFF3693 at 193.121 kb on + strand, within GFF3693 at 193.121 kb on + strand, within GFF3693 at 193.121 kb on + strand, within GFF3693 at 193.122 kb on - strand, within GFF3693 at 193.122 kb on - strand, within GFF3693 at 193.205 kb on + strand, within GFF3693 at 193.206 kb on - strand, within GFF3693 at 193.206 kb on - strand, within GFF3693 at 193.359 kb on + strand, within GFF3693 at 193.359 kb on + strand, within GFF3693 at 193.359 kb on + strand, within GFF3693 at 193.359 kb on + strand, within GFF3693 at 193.360 kb on - strand, within GFF3693 at 193.360 kb on - strand, within GFF3693 at 193.697 kb on + strand, within GFF3693 at 193.698 kb on - strand, within GFF3693 at 193.766 kb on + strand at 194.034 kb on + strand, within GFF3694 at 194.034 kb on + strand, within GFF3694 at 194.035 kb on - strand, within GFF3694 at 194.035 kb on - strand, within GFF3694 at 194.035 kb on - strand, within GFF3694 at 194.035 kb on - strand, within GFF3694 at 194.130 kb on + strand, within GFF3694 at 194.130 kb on + strand, within GFF3694 at 194.131 kb on - strand, within GFF3694 at 194.148 kb on + strand, within GFF3694 at 194.149 kb on - strand, within GFF3694 at 194.467 kb on - strand, within GFF3694 at 194.596 kb on - strand at 194.609 kb on + strand at 194.634 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 191,873 - GFF3692 0.15 +0.5 191,873 - GFF3692 0.15 -0.9 192,077 - GFF3692 0.36 -0.8 192,077 - GFF3692 0.36 -0.0 192,127 + GFF3692 0.41 -0.4 192,127 + GFF3692 0.41 -1.5 192,127 + GFF3692 0.41 -0.4 192,128 - GFF3692 0.41 +0.1 192,128 - GFF3692 0.41 +0.0 192,172 + GFF3692 0.46 +0.6 192,173 - GFF3692 0.46 +0.4 192,173 - GFF3692 0.46 -1.4 192,173 - GFF3692 0.46 +1.3 192,173 - GFF3692 0.46 -0.8 192,310 + GFF3692 0.60 +0.2 192,310 + GFF3692 0.60 -0.7 192,311 - GFF3692 0.60 -0.1 192,311 - GFF3692 0.60 +0.2 192,311 - GFF3692 0.60 +0.7 192,356 - GFF3692 0.65 -1.6 192,544 + GFF3692 0.84 -0.2 192,544 + GFF3692 0.84 -0.4 192,545 - GFF3692 0.85 -0.6 192,563 - GFF3692 0.86 -2.1 192,563 - GFF3692 0.86 -0.8 192,670 + +0.1 192,671 - -0.3 192,671 - +0.0 192,671 - -1.2 192,671 - +0.9 192,671 - +0.6 193,115 + GFF3693 0.36 -0.4 193,115 + GFF3693 0.36 -0.3 193,116 - GFF3693 0.36 +0.4 193,116 - GFF3693 0.36 -0.7 193,121 + GFF3693 0.37 -0.2 193,121 + GFF3693 0.37 +0.6 193,121 + GFF3693 0.37 -1.5 193,122 - GFF3693 0.37 +1.8 193,122 - GFF3693 0.37 -0.9 193,205 + GFF3693 0.44 +1.3 193,206 - GFF3693 0.44 +0.0 193,206 - GFF3693 0.44 +0.4 193,359 + GFF3693 0.57 +0.1 193,359 + GFF3693 0.57 +0.4 193,359 + GFF3693 0.57 +0.8 193,359 + GFF3693 0.57 +0.7 193,360 - GFF3693 0.57 +2.1 193,360 - GFF3693 0.57 +1.4 193,697 + GFF3693 0.86 -0.4 193,698 - GFF3693 0.86 +0.1 193,766 + -0.4 194,034 + GFF3694 0.21 -1.0 194,034 + GFF3694 0.21 -0.6 194,035 - GFF3694 0.21 -0.4 194,035 - GFF3694 0.21 +0.6 194,035 - GFF3694 0.21 +0.0 194,035 - GFF3694 0.21 -1.2 194,130 + GFF3694 0.34 +0.2 194,130 + GFF3694 0.34 +0.8 194,131 - GFF3694 0.35 -1.1 194,148 + GFF3694 0.37 -0.6 194,149 - GFF3694 0.37 -0.3 194,467 - GFF3694 0.82 -1.2 194,596 - -3.3 194,609 + -0.1 194,634 + +1.8
Or see this region's nucleotide sequence