Strain Fitness in Variovorax sp. SCN45 around GFF3653

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
155,375	+		GFF3650	0.74	-0.4
155,375	+		GFF3650	0.74	-1.2
155,375	+		GFF3650	0.74	-0.7
155,375	+		GFF3650	0.74	-0.7
155,375	+		GFF3650	0.74	-1.1
155,375	+		GFF3650	0.74	-0.2
155,375	+		GFF3650	0.74	-1.4
155,375	+		GFF3650	0.74	-0.1
155,375	+		GFF3650	0.74	-0.5
155,375	+		GFF3650	0.74	+0.8
155,375	+		GFF3650	0.74	+0.1
155,376	-		GFF3650	0.74	+0.2
155,376	-		GFF3650	0.74	+0.5
155,376	-		GFF3650	0.74	+1.0
155,425	+		GFF3650	0.84	-0.3
155,426	-		GFF3650	0.84	-1.0
155,426	-		GFF3650	0.84	+0.1
155,426	-		GFF3650	0.84	+0.1
155,509	+				-0.4
155,510	-				+0.2
155,510	-				-0.3
155,510	-				-1.5
155,524	-				+0.1
155,534	+				-0.5
155,600	+				-2.3
155,601	+				-0.6
155,601	+				-0.3
155,601	+				+0.1
155,601	+				+0.5
155,601	+				+0.0
155,601	+				+0.3
155,601	+				+0.2
155,601	+				-0.2
155,601	+				+0.4
155,601	+				+0.1
155,601	+				+0.4
155,601	+				-0.2
155,602	-				+0.4
155,602	-				+0.7
155,602	-				-1.6
155,602	-				+0.3
155,602	-				-0.0
155,602	-				-1.3
155,602	-				+1.0
155,602	-				+1.5
155,602	-				+0.4
155,605	+				-0.4
155,605	+				+0.9
155,605	+				+0.1
155,605	+				-0.5
155,605	+				-0.6
155,605	+				+0.2
155,605	+				-0.5
155,605	+				+0.3
155,605	+				-1.1
155,605	+				-1.0
155,605	+				+0.2
155,605	+				-1.0
155,605	+				-0.0
155,605	+				-0.8
155,605	+				-0.5
155,605	+				-0.8
155,605	+				-2.0
155,605	+				+0.2
155,605	+				-0.6
155,605	+				+0.4
155,605	+				-0.5
155,605	+				-0.1
155,605	+				-0.1
155,605	+				-0.7
155,605	+				+0.0
155,605	+				-0.2
155,605	+				-0.5
155,605	+				-1.4
155,605	+				-0.7
155,605	+				+0.9
155,605	+				+1.1
155,606	-				-0.3
155,606	-				-0.4
155,606	-				-0.2
155,606	-				-0.8
155,606	-				-0.6
155,606	-				-0.2
155,606	-				+0.2
155,606	-				-0.9
155,606	-				-1.1
155,606	-				-0.3
155,606	-				+0.0
155,606	-				+1.0
155,606	-				-0.2
155,606	-				-0.6
155,606	-				-1.2
155,606	-				-0.5
155,606	-				+0.5
155,606	-				-0.5
155,606	-				+0.4
155,628	+				+0.5
155,628	+				-1.2
155,628	+				-0.5
155,967	+		GFF3651	0.68	+1.1
155,967	+		GFF3651	0.68	-0.5
155,968	-		GFF3651	0.69	+0.8
155,968	-		GFF3651	0.69	-0.8
156,108	+				+0.4
156,108	+				-0.7
156,108	+				-1.1
156,108	+				-1.2
156,108	+				-1.8
156,108	+				+0.1
156,108	+				-3.4
156,108	+				-0.0
156,108	+				-0.8
156,108	+				-2.1
156,108	+				-0.8
156,109	-				-2.3
156,109	-				-1.6
156,109	-				-2.2
156,109	-				-1.2
156,109	-				+0.2
156,109	-				-1.8
156,109	-				+0.2
156,109	-				-3.0
156,109	-				-2.8
156,346	+				-0.4
156,346	+				-1.0
156,347	-				+1.2
156,347	-				-0.3
156,347	-				+1.8
156,452	+				-0.1
156,452	+				-1.7
156,452	+				-1.0
156,452	+				-2.3
156,452	+				-0.3
156,452	+				-1.4
156,452	+				-0.5
156,452	+				-0.3
156,452	+				-0.2
156,452	+				-0.4
156,452	+				-1.2
156,452	+				-1.0
156,452	+				-0.6
156,452	+				-1.9
156,453	-				-3.4
156,453	-				-1.1
156,453	-				-0.9
156,453	-				-0.6
156,453	-				-2.5
156,671	+		GFF3653	0.17	-1.0
156,671	+		GFF3653	0.17	-0.9
156,671	+		GFF3653	0.17	+0.2
156,672	-		GFF3653	0.17	-0.2
156,672	-		GFF3653	0.17	-1.4
156,672	-		GFF3653	0.17	-1.1
156,672	-		GFF3653	0.17	+0.8
156,672	-		GFF3653	0.17	-1.0
156,672	-		GFF3653	0.17	+0.2
156,743	+		GFF3653	0.21	-0.5
156,743	+		GFF3653	0.21	-1.0
156,744	-		GFF3653	0.21	-1.2
156,744	-		GFF3653	0.21	-1.4
156,744	-		GFF3653	0.21	-1.1
157,169	+		GFF3653	0.45	-0.9
157,281	-		GFF3653	0.51	-1.4
157,412	+		GFF3653	0.58	-1.5
157,412	+		GFF3653	0.58	-1.2
157,412	+		GFF3653	0.58	+0.8
157,412	+		GFF3653	0.58	-1.2
157,412	+		GFF3653	0.58	-0.5
157,412	+		GFF3653	0.58	-0.6
157,412	+		GFF3653	0.58	-1.6
157,412	+		GFF3653	0.58	-0.5
157,412	+		GFF3653	0.58	-1.9
157,413	-		GFF3653	0.58	-1.2
157,413	-		GFF3653	0.58	-1.0
157,413	-		GFF3653	0.58	-1.9
157,413	-		GFF3653	0.58	-0.5
157,421	+		GFF3653	0.59	+0.1
157,421	+		GFF3653	0.59	-1.5
157,421	+		GFF3653	0.59	-0.2
157,421	+		GFF3653	0.59	-2.1
157,421	+		GFF3653	0.59	+0.0
157,421	+		GFF3653	0.59	-1.2
157,421	+		GFF3653	0.59	-0.2
157,421	+		GFF3653	0.59	-1.6
157,422	-		GFF3653	0.59	-0.4
157,422	-		GFF3653	0.59	-1.8
157,422	-		GFF3653	0.59	-1.4
157,422	-		GFF3653	0.59	-1.9
157,422	-		GFF3653	0.59	-1.3
157,422	-		GFF3653	0.59	+1.8
157,422	-		GFF3653	0.59	-0.5
157,422	-		GFF3653	0.59	-1.2
157,736	+		GFF3653	0.76	+0.4
157,736	+		GFF3653	0.76	-0.1
157,737	-		GFF3653	0.76	+0.8
157,737	-		GFF3653	0.76	-1.3
157,737	-		GFF3653	0.76	-0.5
157,737	-		GFF3653	0.76	+0.2
157,737	-		GFF3653	0.76	-1.4
157,770	+		GFF3653	0.78	-1.1
157,770	+		GFF3653	0.78	-1.1
157,771	-		GFF3653	0.78	-0.2
157,850	+		GFF3653	0.82	-1.3
157,850	+		GFF3653	0.82	+0.5
157,850	+		GFF3653	0.82	-0.5
157,850	+		GFF3653	0.82	-1.2
157,850	+		GFF3653	0.82	-1.2
157,851	-		GFF3653	0.82	-1.5
157,851	-		GFF3653	0.82	-0.8
157,851	-		GFF3653	0.82	+0.5
157,895	+		GFF3653	0.85	-1.0
157,895	+		GFF3653	0.85	-0.8
157,895	+		GFF3653	0.85	-0.2
157,895	+		GFF3653	0.85	-1.1
157,896	-		GFF3653	0.85	-1.8
157,896	-		GFF3653	0.85	-3.5
157,896	-		GFF3653	0.85	-1.6
158,869	+		GFF3654	0.89	-0.6
158,869	+		GFF3654	0.89	-0.5
158,870	-		GFF3654	0.89	-0.2
158,934	-				+0.8
158,958	+				-0.2
158,958	+				-0.4
158,959	-				+0.1
159,140	+		GFF3655	0.22	+0.2
159,140	+		GFF3655	0.22	-0.2
159,140	+		GFF3655	0.22	-0.4
159,140	+		GFF3655	0.22	+0.6
159,140	+		GFF3655	0.22	-0.9
159,140	+		GFF3655	0.22	-0.3
159,141	-		GFF3655	0.22	+0.2
159,141	-		GFF3655	0.22	+0.2
159,141	-		GFF3655	0.22	-0.4
159,141	-		GFF3655	0.22	+0.2
159,141	-		GFF3655	0.22	-0.6
159,141	-		GFF3655	0.22	-0.5
159,141	-		GFF3655	0.22	-1.0