Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3622 and GFF3623 are separated by 367 nucleotides GFF3623 and GFF3624 are separated by 11 nucleotides GFF3624 and GFF3625 are separated by 9 nucleotides GFF3625 and GFF3626 are separated by 36 nucleotides
GFF3622 - Porphobilinogen synthase (EC 4.2.1.24), at 134,001 to 134,987
GFF3622
GFF3623 - Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-), at 135,355 to 135,783
GFF3623
GFF3624 - Putative transmembrane protein, at 135,795 to 136,952
GFF3624
GFF3625 - Ferredoxin, 2Fe-2S, at 136,962 to 137,315
GFF3625
GFF3626 - Hydrolase, alpha/beta fold family, at 137,352 to 137,984
GFF3626
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.014 kb on + strand at 135.015 kb on - strand at 135.015 kb on - strand at 135.015 kb on - strand at 135.015 kb on - strand at 135.015 kb on - strand at 135.016 kb on + strand at 135.016 kb on + strand at 135.016 kb on + strand at 135.016 kb on + strand at 135.017 kb on - strand at 135.017 kb on - strand at 135.083 kb on + strand at 135.083 kb on + strand at 135.087 kb on + strand at 135.088 kb on + strand at 135.088 kb on + strand at 135.088 kb on + strand at 135.088 kb on + strand at 135.095 kb on + strand at 135.095 kb on + strand at 135.096 kb on - strand at 135.101 kb on + strand at 135.101 kb on + strand at 135.101 kb on + strand at 135.123 kb on + strand at 135.123 kb on + strand at 135.123 kb on + strand at 135.123 kb on + strand at 135.313 kb on - strand at 135.344 kb on - strand at 135.344 kb on - strand at 135.344 kb on - strand at 135.852 kb on + strand at 135.852 kb on + strand at 135.853 kb on - strand at 135.853 kb on - strand at 135.853 kb on - strand at 135.870 kb on + strand at 135.882 kb on + strand at 135.882 kb on + strand at 135.927 kb on + strand, within GFF3624 at 135.927 kb on + strand, within GFF3624 at 135.927 kb on + strand, within GFF3624 at 135.927 kb on + strand, within GFF3624 at 135.927 kb on + strand, within GFF3624 at 135.927 kb on + strand, within GFF3624 at 135.928 kb on - strand, within GFF3624 at 135.928 kb on - strand, within GFF3624 at 135.928 kb on - strand, within GFF3624 at 135.928 kb on - strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.951 kb on + strand, within GFF3624 at 135.952 kb on - strand, within GFF3624 at 135.952 kb on - strand, within GFF3624 at 135.952 kb on - strand, within GFF3624 at 135.952 kb on - strand, within GFF3624 at 135.952 kb on - strand, within GFF3624 at 135.952 kb on - strand, within GFF3624 at 135.952 kb on - strand, within GFF3624 at 135.952 kb on - strand, within GFF3624 at 135.952 kb on - strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.990 kb on + strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.991 kb on - strand, within GFF3624 at 135.993 kb on - strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.122 kb on + strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.123 kb on - strand, within GFF3624 at 136.152 kb on + strand, within GFF3624 at 136.506 kb on + strand, within GFF3624 at 136.507 kb on - strand, within GFF3624 at 136.507 kb on - strand, within GFF3624 at 136.507 kb on - strand, within GFF3624 at 136.507 kb on - strand, within GFF3624 at 136.507 kb on - strand, within GFF3624 at 136.602 kb on + strand, within GFF3624 at 136.602 kb on + strand, within GFF3624 at 136.602 kb on + strand, within GFF3624 at 136.602 kb on + strand, within GFF3624 at 136.603 kb on - strand, within GFF3624 at 136.603 kb on - strand, within GFF3624 at 136.603 kb on - strand, within GFF3624 at 136.776 kb on + strand, within GFF3624 at 136.777 kb on - strand, within GFF3624 at 136.777 kb on - strand, within GFF3624 at 136.777 kb on - strand, within GFF3624 at 136.777 kb on - strand, within GFF3624 at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.878 kb on + strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.879 kb on - strand at 136.885 kb on + strand at 136.885 kb on + strand at 136.886 kb on - strand at 136.950 kb on + strand at 136.950 kb on + strand at 136.950 kb on + strand at 136.951 kb on - strand at 136.951 kb on - strand at 136.951 kb on - strand at 136.995 kb on + strand at 136.995 kb on + strand at 136.995 kb on + strand at 136.995 kb on + strand at 136.996 kb on - strand at 136.996 kb on - strand at 136.998 kb on + strand, within GFF3625 at 136.998 kb on + strand, within GFF3625 at 136.998 kb on + strand, within GFF3625 at 136.999 kb on - strand, within GFF3625 at 136.999 kb on - strand, within GFF3625 at 136.999 kb on - strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.193 kb on + strand, within GFF3625 at 137.194 kb on - strand, within GFF3625 at 137.211 kb on + strand, within GFF3625 at 137.211 kb on + strand, within GFF3625 at 137.211 kb on + strand, within GFF3625 at 137.212 kb on - strand, within GFF3625 at 137.212 kb on - strand, within GFF3625 at 137.340 kb on + strand at 137.340 kb on + strand at 137.340 kb on + strand at 137.340 kb on + strand at 137.340 kb on + strand at 137.340 kb on + strand at 137.341 kb on - strand at 137.341 kb on - strand at 137.341 kb on - strand at 137.341 kb on - strand at 137.341 kb on - strand at 137.341 kb on - strand at 137.341 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 135,014 + -0.5 135,014 + +3.8 135,014 + +1.2 135,014 + +1.2 135,014 + +1.6 135,014 + +1.8 135,014 + +3.8 135,014 + +1.8 135,014 + +0.8 135,014 + +0.8 135,014 + -0.2 135,014 + +1.2 135,014 + +3.8 135,015 - +1.8 135,015 - +2.8 135,015 - +1.8 135,015 - -1.6 135,015 - +1.8 135,016 + +1.8 135,016 + +0.4 135,016 + -1.2 135,016 + +1.8 135,017 - +1.8 135,017 - +1.8 135,083 + -0.8 135,083 + +1.8 135,087 + +0.2 135,088 + +2.4 135,088 + +1.8 135,088 + +1.8 135,088 + -0.2 135,095 + -0.4 135,095 + -1.0 135,096 - +1.8 135,101 + -1.2 135,101 + +2.5 135,101 + +0.5 135,123 + +0.8 135,123 + -1.0 135,123 + -0.4 135,123 + +0.8 135,313 - +0.0 135,344 - +0.5 135,344 - +0.1 135,344 - -1.0 135,852 + +1.8 135,852 + +1.8 135,853 - +2.4 135,853 - -0.6 135,853 - -0.5 135,870 + +0.8 135,882 + +1.8 135,882 + +1.8 135,927 + GFF3624 0.11 +1.8 135,927 + GFF3624 0.11 +1.8 135,927 + GFF3624 0.11 +4.8 135,927 + GFF3624 0.11 +0.2 135,927 + GFF3624 0.11 +1.8 135,927 + GFF3624 0.11 +0.8 135,928 - GFF3624 0.11 -1.8 135,928 - GFF3624 0.11 -0.5 135,928 - GFF3624 0.11 +0.1 135,928 - GFF3624 0.11 +0.5 135,951 + GFF3624 0.13 +0.8 135,951 + GFF3624 0.13 +3.1 135,951 + GFF3624 0.13 -2.2 135,951 + GFF3624 0.13 +0.8 135,951 + GFF3624 0.13 +4.4 135,951 + GFF3624 0.13 +1.8 135,951 + GFF3624 0.13 +0.8 135,951 + GFF3624 0.13 +0.8 135,951 + GFF3624 0.13 +0.8 135,951 + GFF3624 0.13 +0.8 135,951 + GFF3624 0.13 +4.4 135,952 - GFF3624 0.14 +0.2 135,952 - GFF3624 0.14 +0.8 135,952 - GFF3624 0.14 -0.8 135,952 - GFF3624 0.14 +1.8 135,952 - GFF3624 0.14 +1.3 135,952 - GFF3624 0.14 +0.6 135,952 - GFF3624 0.14 -0.1 135,952 - GFF3624 0.14 +0.8 135,952 - GFF3624 0.14 +1.4 135,990 + GFF3624 0.17 +1.8 135,990 + GFF3624 0.17 +0.8 135,990 + GFF3624 0.17 +2.4 135,990 + GFF3624 0.17 +1.8 135,990 + GFF3624 0.17 +1.8 135,990 + GFF3624 0.17 +0.8 135,990 + GFF3624 0.17 -0.2 135,990 + GFF3624 0.17 +1.8 135,990 + GFF3624 0.17 -1.2 135,990 + GFF3624 0.17 +2.8 135,990 + GFF3624 0.17 +1.8 135,991 - GFF3624 0.17 -0.2 135,991 - GFF3624 0.17 -0.8 135,991 - GFF3624 0.17 +1.4 135,991 - GFF3624 0.17 +0.2 135,991 - GFF3624 0.17 +0.5 135,991 - GFF3624 0.17 +0.4 135,991 - GFF3624 0.17 -0.6 135,991 - GFF3624 0.17 -0.2 135,991 - GFF3624 0.17 +0.8 135,991 - GFF3624 0.17 -0.5 135,991 - GFF3624 0.17 +0.8 135,991 - GFF3624 0.17 -0.3 135,991 - GFF3624 0.17 -0.1 135,991 - GFF3624 0.17 +0.8 135,991 - GFF3624 0.17 -0.3 135,991 - GFF3624 0.17 +1.2 135,991 - GFF3624 0.17 +1.5 135,993 - GFF3624 0.17 +0.5 136,122 + GFF3624 0.28 +1.8 136,122 + GFF3624 0.28 +1.8 136,122 + GFF3624 0.28 +1.8 136,122 + GFF3624 0.28 +0.8 136,122 + GFF3624 0.28 +0.8 136,122 + GFF3624 0.28 +1.8 136,122 + GFF3624 0.28 +1.8 136,122 + GFF3624 0.28 +4.8 136,122 + GFF3624 0.28 +0.8 136,123 - GFF3624 0.28 -1.3 136,123 - GFF3624 0.28 +0.4 136,123 - GFF3624 0.28 +0.8 136,123 - GFF3624 0.28 +0.2 136,123 - GFF3624 0.28 -0.6 136,123 - GFF3624 0.28 -1.0 136,123 - GFF3624 0.28 +3.4 136,123 - GFF3624 0.28 -0.2 136,123 - GFF3624 0.28 -0.3 136,152 + GFF3624 0.31 +1.8 136,506 + GFF3624 0.61 +1.2 136,507 - GFF3624 0.61 -0.1 136,507 - GFF3624 0.61 -0.2 136,507 - GFF3624 0.61 -0.9 136,507 - GFF3624 0.61 -0.1 136,507 - GFF3624 0.61 +0.9 136,602 + GFF3624 0.70 +1.0 136,602 + GFF3624 0.70 +0.6 136,602 + GFF3624 0.70 +0.2 136,602 + GFF3624 0.70 +4.1 136,603 - GFF3624 0.70 -0.2 136,603 - GFF3624 0.70 +0.6 136,603 - GFF3624 0.70 +1.8 136,776 + GFF3624 0.85 +0.8 136,777 - GFF3624 0.85 +0.7 136,777 - GFF3624 0.85 +0.2 136,777 - GFF3624 0.85 +0.8 136,777 - GFF3624 0.85 -0.3 136,878 + -0.3 136,878 + -1.2 136,878 + -1.0 136,878 + +0.2 136,878 + +0.8 136,878 + -1.8 136,878 + +1.8 136,878 + +1.0 136,878 + +1.2 136,878 + +2.4 136,878 + -1.0 136,878 + +2.4 136,878 + +2.8 136,878 + +1.8 136,879 - +0.5 136,879 - -0.4 136,879 - -1.0 136,879 - +0.1 136,879 - -0.9 136,879 - -0.2 136,879 - -0.4 136,879 - +0.6 136,879 - -1.4 136,879 - -1.3 136,879 - +0.3 136,879 - -0.1 136,879 - -0.6 136,879 - +1.8 136,879 - -0.6 136,879 - +0.8 136,879 - -0.9 136,879 - +0.5 136,879 - -0.5 136,885 + +0.8 136,885 + +0.2 136,886 - -0.2 136,950 + +0.8 136,950 + +1.6 136,950 + -0.5 136,951 - +0.1 136,951 - -0.6 136,951 - -0.3 136,995 + +1.4 136,995 + +1.2 136,995 + +0.4 136,995 + +1.8 136,996 - +1.2 136,996 - +0.2 136,998 + GFF3625 0.10 +1.2 136,998 + GFF3625 0.10 +3.4 136,998 + GFF3625 0.10 +0.8 136,999 - GFF3625 0.10 +0.0 136,999 - GFF3625 0.10 -0.2 136,999 - GFF3625 0.10 -0.3 137,193 + GFF3625 0.65 -0.5 137,193 + GFF3625 0.65 +0.8 137,193 + GFF3625 0.65 +0.7 137,193 + GFF3625 0.65 -0.2 137,193 + GFF3625 0.65 +1.4 137,193 + GFF3625 0.65 -0.2 137,194 - GFF3625 0.66 +0.6 137,211 + GFF3625 0.70 +1.1 137,211 + GFF3625 0.70 +0.3 137,211 + GFF3625 0.70 -0.4 137,212 - GFF3625 0.71 -0.5 137,212 - GFF3625 0.71 +0.5 137,340 + -0.1 137,340 + -0.8 137,340 + +0.6 137,340 + +0.4 137,340 + +3.0 137,340 + +0.7 137,341 - -0.7 137,341 - -0.1 137,341 - +0.2 137,341 - -1.1 137,341 - -0.6 137,341 - -0.8 137,341 - +0.0
Or see this region's nucleotide sequence