Strain Fitness in Variovorax sp. SCN45 around GFF3576

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3574 and GFF3575 overlap by 4 nucleotidesGFF3575 and GFF3576 overlap by 4 nucleotidesGFF3576 and GFF3577 overlap by 4 nucleotides GFF3574 - hypothetical protein, at 86,391 to 87,233 GFF3574 GFF3575 - no description, at 87,230 to 87,916 GFF3575 GFF3576 - no description, at 87,913 to 88,554 GFF3576 GFF3577 - Transcriptional regulator, LysR family, at 88,551 to 89,441 GFF3577 Position (kb) 87 88 89Strain fitness (log2 ratio) -2 -1 0 1at 86.928 kb on + strand, within GFF3574at 86.928 kb on + strand, within GFF3574at 86.929 kb on - strand, within GFF3574at 87.422 kb on + strand, within GFF3575at 87.422 kb on + strand, within GFF3575at 87.722 kb on + strand, within GFF3575at 87.722 kb on + strand, within GFF3575at 87.722 kb on + strand, within GFF3575at 87.723 kb on - strand, within GFF3575at 87.723 kb on - strand, within GFF3575at 87.723 kb on - strand, within GFF3575at 88.074 kb on + strand, within GFF3576at 88.074 kb on + strand, within GFF3576at 88.075 kb on - strand, within GFF3576at 88.240 kb on + strand, within GFF3576at 88.241 kb on - strand, within GFF3576at 88.633 kb on + strandat 88.633 kb on + strandat 88.633 kb on + strandat 88.634 kb on - strandat 88.720 kb on + strand, within GFF3577at 88.720 kb on + strand, within GFF3577at 88.721 kb on - strand, within GFF3577at 88.721 kb on - strand, within GFF3577at 88.930 kb on + strand, within GFF3577at 88.931 kb on - strand, within GFF3577at 89.089 kb on + strand, within GFF3577at 89.089 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.125 kb on + strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.126 kb on - strand, within GFF3577at 89.248 kb on + strand, within GFF3577at 89.248 kb on + strand, within GFF3577

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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86,928 + GFF3574 0.64 +0.0
86,928 + GFF3574 0.64 -1.6
86,929 - GFF3574 0.64 +0.8
87,422 + GFF3575 0.28 -0.1
87,422 + GFF3575 0.28 -0.0
87,722 + GFF3575 0.72 +0.1
87,722 + GFF3575 0.72 +0.6
87,722 + GFF3575 0.72 -0.3
87,723 - GFF3575 0.72 -0.7
87,723 - GFF3575 0.72 +0.9
87,723 - GFF3575 0.72 +0.8
88,074 + GFF3576 0.25 -0.8
88,074 + GFF3576 0.25 +0.2
88,075 - GFF3576 0.25 +1.6
88,240 + GFF3576 0.51 -0.8
88,241 - GFF3576 0.51 +1.3
88,633 + -0.4
88,633 + -0.2
88,633 + -0.1
88,634 - +0.7
88,720 + GFF3577 0.19 -0.1
88,720 + GFF3577 0.19 +0.5
88,721 - GFF3577 0.19 -0.1
88,721 - GFF3577 0.19 -0.5
88,930 + GFF3577 0.43 +1.1
88,931 - GFF3577 0.43 +0.4
89,089 + GFF3577 0.60 -0.3
89,089 + GFF3577 0.60 +0.1
89,125 + GFF3577 0.64 +0.4
89,125 + GFF3577 0.64 +0.2
89,125 + GFF3577 0.64 -0.1
89,125 + GFF3577 0.64 +0.5
89,125 + GFF3577 0.64 -0.1
89,125 + GFF3577 0.64 -2.2
89,125 + GFF3577 0.64 +0.1
89,125 + GFF3577 0.64 +1.2
89,125 + GFF3577 0.64 -0.1
89,125 + GFF3577 0.64 -0.7
89,125 + GFF3577 0.64 -1.9
89,125 + GFF3577 0.64 -1.6
89,125 + GFF3577 0.64 +0.5
89,125 + GFF3577 0.64 -1.2
89,126 - GFF3577 0.65 -0.1
89,126 - GFF3577 0.65 -0.1
89,126 - GFF3577 0.65 +0.5
89,126 - GFF3577 0.65 +0.1
89,126 - GFF3577 0.65 +0.0
89,126 - GFF3577 0.65 +0.8
89,126 - GFF3577 0.65 -0.2
89,126 - GFF3577 0.65 -1.4
89,126 - GFF3577 0.65 +1.0
89,126 - GFF3577 0.65 +0.1
89,126 - GFF3577 0.65 -0.5
89,126 - GFF3577 0.65 -0.3
89,126 - GFF3577 0.65 -0.8
89,126 - GFF3577 0.65 -0.3
89,248 + GFF3577 0.78 -1.3
89,248 + GFF3577 0.78 -0.3

Or see this region's nucleotide sequence