Strain Fitness in Variovorax sp. SCN45 around GFF3558

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3557 and GFF3558 overlap by 11 nucleotidesGFF3558 and GFF3559 are separated by 3 nucleotidesGFF3559 and GFF3560 overlap by 11 nucleotides GFF3557 - hypothetical protein, at 67,458 to 69,131 GFF3557 GFF3558 - hypothetical protein, at 69,121 to 70,251 GFF3558 GFF3559 - no description, at 70,255 to 71,031 GFF3559 GFF3560 - hypothetical protein, at 71,021 to 72,040 GFF3560 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1at 68.160 kb on + strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.696 kb on - strand, within GFF3557at 68.770 kb on - strand, within GFF3557at 69.398 kb on + strand, within GFF3558at 69.513 kb on - strand, within GFF3558at 69.513 kb on - strand, within GFF3558at 69.609 kb on - strand, within GFF3558at 69.855 kb on - strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.070 kb on + strand, within GFF3558at 70.071 kb on - strand, within GFF3558at 70.232 kb on + strandat 70.233 kb on - strandat 70.233 kb on - strandat 70.233 kb on - strandat 70.233 kb on - strandat 70.577 kb on + strand, within GFF3559at 70.577 kb on + strand, within GFF3559at 70.577 kb on + strand, within GFF3559at 70.577 kb on + strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.578 kb on - strand, within GFF3559at 70.862 kb on + strand, within GFF3559at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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68,160 + GFF3557 0.42 -0.7
68,160 + GFF3557 0.42 -0.7
68,160 + GFF3557 0.42 -1.0
68,160 + GFF3557 0.42 +0.2
68,235 + GFF3557 0.46 -0.6
68,235 + GFF3557 0.46 -1.1
68,235 + GFF3557 0.46 -0.6
68,235 + GFF3557 0.46 +0.2
68,235 + GFF3557 0.46 -0.7
68,235 + GFF3557 0.46 +1.1
68,235 + GFF3557 0.46 -0.0
68,235 + GFF3557 0.46 -0.2
68,235 + GFF3557 0.46 -0.9
68,235 + GFF3557 0.46 +0.2
68,235 + GFF3557 0.46 +0.5
68,236 - GFF3557 0.46 -0.0
68,236 - GFF3557 0.46 -0.9
68,236 - GFF3557 0.46 +0.4
68,236 - GFF3557 0.46 +0.0
68,236 - GFF3557 0.46 -0.6
68,236 - GFF3557 0.46 -0.2
68,236 - GFF3557 0.46 -0.2
68,236 - GFF3557 0.46 +0.5
68,236 - GFF3557 0.46 -0.0
68,236 - GFF3557 0.46 -1.4
68,236 - GFF3557 0.46 +1.1
68,236 - GFF3557 0.46 -0.8
68,236 - GFF3557 0.46 +0.8
68,236 - GFF3557 0.46 +0.5
68,236 - GFF3557 0.46 -0.4
68,236 - GFF3557 0.46 +0.4
68,236 - GFF3557 0.46 -0.2
68,236 - GFF3557 0.46 -0.2
68,236 - GFF3557 0.46 +0.9
68,236 - GFF3557 0.46 -0.4
68,236 - GFF3557 0.46 +1.1
68,589 + GFF3557 0.68 +1.2
68,589 + GFF3557 0.68 -0.0
68,589 + GFF3557 0.68 -0.2
68,589 + GFF3557 0.68 +1.5
68,589 + GFF3557 0.68 +0.3
68,589 + GFF3557 0.68 +0.4
68,589 + GFF3557 0.68 -0.5
68,589 + GFF3557 0.68 +1.2
68,589 + GFF3557 0.68 -0.1
68,589 + GFF3557 0.68 -0.8
68,589 + GFF3557 0.68 -0.4
68,589 + GFF3557 0.68 +0.0
68,590 - GFF3557 0.68 +0.0
68,590 - GFF3557 0.68 -0.1
68,590 - GFF3557 0.68 -0.0
68,590 - GFF3557 0.68 +1.1
68,590 - GFF3557 0.68 +1.0
68,590 - GFF3557 0.68 -1.0
68,696 - GFF3557 0.74 +0.4
68,770 - GFF3557 0.78 -0.1
69,398 + GFF3558 0.24 -1.0
69,513 - GFF3558 0.35 -1.0
69,513 - GFF3558 0.35 -0.6
69,609 - GFF3558 0.43 +0.6
69,855 - GFF3558 0.65 +0.6
70,004 + GFF3558 0.78 +0.1
70,004 + GFF3558 0.78 -0.1
70,004 + GFF3558 0.78 -0.4
70,004 + GFF3558 0.78 -1.8
70,004 + GFF3558 0.78 -0.5
70,004 + GFF3558 0.78 +1.4
70,004 + GFF3558 0.78 +1.0
70,004 + GFF3558 0.78 -0.6
70,004 + GFF3558 0.78 +0.1
70,004 + GFF3558 0.78 -0.1
70,004 + GFF3558 0.78 -0.5
70,004 + GFF3558 0.78 -0.8
70,004 + GFF3558 0.78 -0.5
70,004 + GFF3558 0.78 -0.6
70,004 + GFF3558 0.78 -0.0
70,005 - GFF3558 0.78 -0.6
70,005 - GFF3558 0.78 -1.6
70,005 - GFF3558 0.78 -0.1
70,005 - GFF3558 0.78 +0.2
70,005 - GFF3558 0.78 -1.0
70,005 - GFF3558 0.78 +0.2
70,005 - GFF3558 0.78 -0.4
70,005 - GFF3558 0.78 -0.9
70,070 + GFF3558 0.84 -1.4
70,071 - GFF3558 0.84 -1.0
70,232 + -0.7
70,233 - -0.2
70,233 - -0.0
70,233 - -0.6
70,233 - -2.3
70,577 + GFF3559 0.41 -0.6
70,577 + GFF3559 0.41 -1.1
70,577 + GFF3559 0.41 +1.2
70,577 + GFF3559 0.41 -0.9
70,578 - GFF3559 0.42 -0.1
70,578 - GFF3559 0.42 -0.4
70,578 - GFF3559 0.42 -0.4
70,578 - GFF3559 0.42 +0.9
70,578 - GFF3559 0.42 -1.1
70,578 - GFF3559 0.42 -0.1
70,578 - GFF3559 0.42 -0.6
70,862 + GFF3559 0.78 -0.3
71,172 + GFF3560 0.15 +0.2
71,172 + GFF3560 0.15 -0.2
71,172 + GFF3560 0.15 -0.1
71,172 + GFF3560 0.15 -1.1
71,172 + GFF3560 0.15 -0.3
71,172 + GFF3560 0.15 -1.5
71,173 - GFF3560 0.15 -0.1
71,173 - GFF3560 0.15 +0.3
71,173 - GFF3560 0.15 -0.7
71,173 - GFF3560 0.15 -0.3
71,173 - GFF3560 0.15 -2.1
71,173 - GFF3560 0.15 -0.4
71,173 - GFF3560 0.15 -0.4
71,173 - GFF3560 0.15 -0.2

Or see this region's nucleotide sequence