Strain Fitness in Variovorax sp. SCN45 around GFF3510

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
14,875	+		GFF3509	0.73	-0.1
14,876	-		GFF3509	0.73	-1.2
14,876	-		GFF3509	0.73	+0.4
14,934	+		GFF3509	0.75	+0.0
14,934	+		GFF3509	0.75	+0.8
14,935	-		GFF3509	0.75	+0.3
15,049	+		GFF3509	0.78	-1.4
15,049	+		GFF3509	0.78	-0.9
15,050	-		GFF3509	0.78	-0.2
15,050	-		GFF3509	0.78	-1.1
15,050	-		GFF3509	0.78	-0.3
15,050	-		GFF3509	0.78	-2.6
15,298	+		GFF3509	0.86	-0.8
15,298	+		GFF3509	0.86	+0.8
15,298	+		GFF3509	0.86	-0.1
15,298	+		GFF3509	0.86	+1.8
15,298	+		GFF3509	0.86	+0.6
15,299	-		GFF3509	0.86	-0.5
15,299	-		GFF3509	0.86	+1.4
15,368	-		GFF3509	0.89	-0.3
15,368	-		GFF3509	0.89	-1.5
15,481	+				-0.3
15,481	+				-0.4
15,565	+				-2.2
15,566	-				-0.5
15,780	+				-0.6
15,780	+				+0.4
15,951	+		GFF3510	0.21	-0.9
15,951	+		GFF3510	0.21	+0.5
15,951	+		GFF3510	0.21	+2.7
15,952	-		GFF3510	0.22	-0.6
16,773	-				-0.6
16,836	-				-1.3
16,860	+				-0.3
16,861	-				-0.1
16,911	-				+0.1
16,911	-				-0.6
17,114	+				-0.8
17,115	-				+0.0
17,139	+				-0.5
17,139	+				-1.0
17,139	+				-0.2
17,139	+				-0.3
17,139	+				-0.6
17,139	+				+0.3
17,140	-				-0.4
17,140	-				+0.8
17,140	-				-1.2
17,140	-				-0.5
17,140	-				-1.5
17,140	-				+0.6
17,231	+				-0.1
17,231	+				-0.9
17,527	+		GFF3511	0.36	+1.8
17,766	+		GFF3511	0.60	-0.2
17,773	+		GFF3511	0.61	-0.9
17,775	-		GFF3511	0.61	-0.4