Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3464 and GFF3465 are separated by 63 nucleotides GFF3465 and GFF3466 are separated by 33 nucleotides GFF3466 and GFF3467 overlap by 4 nucleotides
GFF3464 - Urea ABC transporter, substrate-binding protein UrtA, at 285,759 to 286,952
GFF3464
GFF3465 - hypothetical protein, at 287,016 to 287,297
GFF3465
GFF3466 - FIG00932805: hypothetical protein, at 287,331 to 287,825
GFF3466
GFF3467 - Transcriptional regulator, LysR family, at 287,822 to 288,769
GFF3467
Position (kb) 287
288 Strain fitness (log2 ratio) -1
0
1
2 at 286.408 kb on + strand, within GFF3464 at 286.408 kb on + strand, within GFF3464 at 286.414 kb on + strand, within GFF3464 at 286.414 kb on + strand, within GFF3464 at 286.415 kb on - strand, within GFF3464 at 286.540 kb on + strand, within GFF3464 at 286.540 kb on + strand, within GFF3464 at 286.540 kb on + strand, within GFF3464 at 286.541 kb on - strand, within GFF3464 at 286.543 kb on + strand, within GFF3464 at 287.180 kb on + strand, within GFF3465 at 287.181 kb on - strand, within GFF3465 at 287.222 kb on + strand, within GFF3465 at 287.222 kb on + strand, within GFF3465 at 287.222 kb on + strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.223 kb on - strand, within GFF3465 at 287.232 kb on - strand, within GFF3465 at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.282 kb on + strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.283 kb on - strand at 287.322 kb on + strand at 287.322 kb on + strand at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.443 kb on + strand, within GFF3466 at 287.827 kb on - strand at 287.839 kb on + strand at 287.839 kb on + strand at 287.892 kb on + strand at 287.893 kb on - strand at 288.136 kb on - strand, within GFF3467 at 288.741 kb on + strand at 288.773 kb on + strand at 288.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 286,408 + GFF3464 0.54 +0.1 286,408 + GFF3464 0.54 +0.2 286,414 + GFF3464 0.55 +0.5 286,414 + GFF3464 0.55 -1.0 286,415 - GFF3464 0.55 -0.2 286,540 + GFF3464 0.65 -1.0 286,540 + GFF3464 0.65 +0.7 286,540 + GFF3464 0.65 -0.5 286,541 - GFF3464 0.65 -0.2 286,543 + GFF3464 0.66 +0.6 287,180 + GFF3465 0.58 -0.1 287,181 - GFF3465 0.59 -0.4 287,222 + GFF3465 0.73 +0.5 287,222 + GFF3465 0.73 +0.9 287,222 + GFF3465 0.73 -0.2 287,223 - GFF3465 0.73 -0.4 287,223 - GFF3465 0.73 +0.4 287,223 - GFF3465 0.73 +0.1 287,223 - GFF3465 0.73 -0.7 287,223 - GFF3465 0.73 -0.2 287,232 - GFF3465 0.77 -0.1 287,282 + +0.2 287,282 + -0.7 287,282 + +0.6 287,282 + +0.9 287,282 + -0.3 287,282 + -0.1 287,283 - +1.9 287,283 - +0.5 287,283 - -0.3 287,283 - +0.8 287,283 - +1.1 287,322 + +0.1 287,322 + +0.3 287,443 + GFF3466 0.23 -1.0 287,443 + GFF3466 0.23 +1.0 287,443 + GFF3466 0.23 +0.0 287,443 + GFF3466 0.23 +0.7 287,443 + GFF3466 0.23 -0.5 287,827 - -0.6 287,839 + +0.5 287,839 + -0.9 287,892 + -0.7 287,893 - +0.1 288,136 - GFF3467 0.33 -0.9 288,741 + +0.1 288,773 + +0.2 288,774 - -0.4
Or see this region's nucleotide sequence