Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3449 and GFF3450 are separated by 130 nucleotides GFF3450 and GFF3451 are separated by 16 nucleotides GFF3451 and GFF3452 are separated by 16 nucleotides
GFF3449 - Intradiol ring-cleavage dioxygenase:Catechol dioxygenase, N-terminal, at 271,513 to 272,379
GFF3449
GFF3450 - Transcriptional regulator, LacI family, at 272,510 to 273,544
GFF3450
GFF3451 - no description, at 273,561 to 273,908
GFF3451
GFF3452 - hypothetical protein, at 273,925 to 275,598
GFF3452
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 271.930 kb on + strand, within GFF3449 at 271.930 kb on + strand, within GFF3449 at 271.930 kb on + strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 271.931 kb on - strand, within GFF3449 at 272.410 kb on + strand at 272.410 kb on + strand at 272.416 kb on + strand at 272.416 kb on + strand at 272.682 kb on - strand, within GFF3450 at 272.816 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.198 kb on - strand, within GFF3450 at 273.299 kb on + strand, within GFF3450 at 273.562 kb on + strand at 273.562 kb on + strand at 273.562 kb on + strand at 273.562 kb on + strand at 273.562 kb on + strand at 273.563 kb on - strand at 273.563 kb on - strand at 273.563 kb on - strand at 273.733 kb on + strand, within GFF3451 at 273.926 kb on + strand at 273.927 kb on - strand at 273.927 kb on - strand at 273.927 kb on - strand at 274.116 kb on - strand, within GFF3452 at 274.116 kb on - strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.368 kb on - strand, within GFF3452 at 274.368 kb on - strand, within GFF3452
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 271,930 + GFF3449 0.48 +0.4 271,930 + GFF3449 0.48 -0.7 271,930 + GFF3449 0.48 +0.1 271,931 - GFF3449 0.48 -1.8 271,931 - GFF3449 0.48 -0.2 271,931 - GFF3449 0.48 -0.1 271,931 - GFF3449 0.48 +0.5 271,931 - GFF3449 0.48 -0.1 272,410 + +1.1 272,410 + -0.3 272,416 + +0.9 272,416 + +0.4 272,682 - GFF3450 0.17 -0.5 272,816 + GFF3450 0.30 +0.4 273,197 + GFF3450 0.66 +0.3 273,197 + GFF3450 0.66 +0.4 273,197 + GFF3450 0.66 -0.4 273,198 - GFF3450 0.66 +0.1 273,299 + GFF3450 0.76 +0.8 273,562 + -1.4 273,562 + -0.5 273,562 + +0.7 273,562 + +0.7 273,562 + +0.4 273,563 - -0.5 273,563 - -0.2 273,563 - -0.3 273,733 + GFF3451 0.49 -0.3 273,926 + +0.5 273,927 - +0.2 273,927 - -0.1 273,927 - -0.1 274,116 - GFF3452 0.11 +0.0 274,116 - GFF3452 0.11 +0.9 274,367 + GFF3452 0.26 -0.3 274,367 + GFF3452 0.26 -0.4 274,367 + GFF3452 0.26 -0.2 274,367 + GFF3452 0.26 +2.9 274,367 + GFF3452 0.26 +0.4 274,367 + GFF3452 0.26 -0.4 274,368 - GFF3452 0.26 -0.6 274,368 - GFF3452 0.26 +1.2
Or see this region's nucleotide sequence