Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3424 and GFF3425 are separated by 104 nucleotides GFF3425 and GFF3426 overlap by 4 nucleotides GFF3426 and GFF3427 overlap by 4 nucleotides GFF3427 and GFF3428 are separated by 4 nucleotides
GFF3424 - FIG00443816: hypothetical protein, at 248,999 to 249,709
GFF3424
GFF3425 - no description, at 249,814 to 250,161
GFF3425
GFF3426 - Predicted kinase, at 250,158 to 250,973
GFF3426
GFF3427 - FIG01006093: hypothetical protein, at 250,970 to 251,479
GFF3427
GFF3428 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-), at 251,484 to 252,296
GFF3428
Position (kb) 250
251 Strain fitness (log2 ratio) -2
-1
0
1 at 249.303 kb on + strand, within GFF3424 at 249.303 kb on + strand, within GFF3424 at 249.303 kb on + strand, within GFF3424 at 249.304 kb on - strand, within GFF3424 at 249.304 kb on - strand, within GFF3424 at 249.304 kb on - strand, within GFF3424 at 249.319 kb on - strand, within GFF3424 at 249.375 kb on + strand, within GFF3424 at 249.376 kb on - strand, within GFF3424 at 249.456 kb on + strand, within GFF3424 at 249.456 kb on + strand, within GFF3424 at 249.456 kb on + strand, within GFF3424 at 249.457 kb on - strand, within GFF3424 at 249.507 kb on + strand, within GFF3424 at 249.507 kb on + strand, within GFF3424 at 249.507 kb on + strand, within GFF3424 at 249.508 kb on - strand, within GFF3424 at 249.508 kb on - strand, within GFF3424 at 249.513 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.579 kb on + strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 249.580 kb on - strand, within GFF3424 at 250.057 kb on + strand, within GFF3425 at 250.057 kb on + strand, within GFF3425 at 250.058 kb on - strand, within GFF3425 at 250.269 kb on + strand, within GFF3426 at 250.269 kb on + strand, within GFF3426 at 250.569 kb on + strand, within GFF3426 at 250.569 kb on + strand, within GFF3426 at 251.282 kb on + strand, within GFF3427 at 251.283 kb on - strand, within GFF3427 at 251.283 kb on - strand, within GFF3427 at 251.436 kb on + strand at 251.444 kb on + strand at 251.445 kb on - strand at 251.445 kb on - strand at 251.511 kb on + strand at 251.512 kb on - strand at 251.637 kb on + strand, within GFF3428 at 251.676 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.686 kb on - strand, within GFF3428 at 251.686 kb on - strand, within GFF3428 at 251.686 kb on - strand, within GFF3428
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 249,303 + GFF3424 0.43 +0.7 249,303 + GFF3424 0.43 -0.8 249,303 + GFF3424 0.43 -0.4 249,304 - GFF3424 0.43 +0.5 249,304 - GFF3424 0.43 -0.1 249,304 - GFF3424 0.43 -0.4 249,319 - GFF3424 0.45 +0.1 249,375 + GFF3424 0.53 -0.5 249,376 - GFF3424 0.53 +0.2 249,456 + GFF3424 0.64 +0.8 249,456 + GFF3424 0.64 +0.5 249,456 + GFF3424 0.64 +0.4 249,457 - GFF3424 0.64 +0.4 249,507 + GFF3424 0.71 +0.3 249,507 + GFF3424 0.71 -0.4 249,507 + GFF3424 0.71 +0.1 249,508 - GFF3424 0.72 -1.6 249,508 - GFF3424 0.72 +0.4 249,513 + GFF3424 0.72 -0.1 249,579 + GFF3424 0.82 +0.7 249,579 + GFF3424 0.82 -0.2 249,579 + GFF3424 0.82 -0.3 249,579 + GFF3424 0.82 -0.4 249,579 + GFF3424 0.82 -0.2 249,579 + GFF3424 0.82 -0.6 249,579 + GFF3424 0.82 -0.9 249,579 + GFF3424 0.82 +0.7 249,580 - GFF3424 0.82 -0.1 249,580 - GFF3424 0.82 -0.6 249,580 - GFF3424 0.82 -0.4 249,580 - GFF3424 0.82 +0.7 249,580 - GFF3424 0.82 -0.9 249,580 - GFF3424 0.82 +0.3 250,057 + GFF3425 0.70 -0.5 250,057 + GFF3425 0.70 +0.2 250,058 - GFF3425 0.70 +0.1 250,269 + GFF3426 0.14 -0.2 250,269 + GFF3426 0.14 -1.6 250,569 + GFF3426 0.50 -0.7 250,569 + GFF3426 0.50 -1.5 251,282 + GFF3427 0.61 -0.7 251,283 - GFF3427 0.61 -0.3 251,283 - GFF3427 0.61 -1.2 251,436 + -0.8 251,444 + -0.7 251,445 - +1.1 251,445 - -0.2 251,511 + +0.4 251,512 - -1.4 251,637 + GFF3428 0.19 +0.9 251,676 + GFF3428 0.24 +0.1 251,685 + GFF3428 0.25 -0.5 251,685 + GFF3428 0.25 -0.1 251,685 + GFF3428 0.25 +0.4 251,685 + GFF3428 0.25 +0.1 251,685 + GFF3428 0.25 -0.1 251,685 + GFF3428 0.25 -1.9 251,685 + GFF3428 0.25 +0.2 251,685 + GFF3428 0.25 +0.9 251,685 + GFF3428 0.25 +0.1 251,686 - GFF3428 0.25 -0.1 251,686 - GFF3428 0.25 -0.1 251,686 - GFF3428 0.25 -1.2
Or see this region's nucleotide sequence