Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3382 and GFF3383 are separated by 168 nucleotides GFF3383 and GFF3384 are separated by 34 nucleotides GFF3384 and GFF3385 are separated by 9 nucleotides
GFF3382 - 3-keto-5-aminohexanoate cleavage enzyme (EC 2.3.1.247), at 203,210 to 204,130
GFF3382
GFF3383 - no description, at 204,299 to 204,682
GFF3383
GFF3384 - Transcriptional regulator, Crp/Fnr family, at 204,717 to 205,427
GFF3384
GFF3385 - Flavin-containing monooxygenase, at 205,437 to 207,248
GFF3385
Position (kb) 204
205
206 Strain fitness (log2 ratio) -1
0
1
2
3 at 203.937 kb on + strand, within GFF3382 at 203.937 kb on + strand, within GFF3382 at 203.938 kb on - strand, within GFF3382 at 204.230 kb on + strand at 204.230 kb on + strand at 204.231 kb on - strand at 204.680 kb on + strand at 204.681 kb on - strand at 205.171 kb on - strand, within GFF3384 at 205.171 kb on - strand, within GFF3384 at 205.468 kb on + strand at 205.469 kb on - strand at 205.469 kb on - strand at 205.528 kb on + strand at 205.528 kb on + strand at 205.735 kb on + strand, within GFF3385 at 205.735 kb on + strand, within GFF3385 at 205.736 kb on - strand, within GFF3385 at 205.736 kb on - strand, within GFF3385 at 205.870 kb on + strand, within GFF3385 at 205.870 kb on + strand, within GFF3385 at 205.870 kb on + strand, within GFF3385 at 205.870 kb on + strand, within GFF3385 at 205.870 kb on + strand, within GFF3385 at 205.871 kb on - strand, within GFF3385 at 205.871 kb on - strand, within GFF3385 at 205.871 kb on - strand, within GFF3385 at 205.871 kb on - strand, within GFF3385 at 205.871 kb on - strand, within GFF3385 at 205.871 kb on - strand, within GFF3385 at 205.874 kb on - strand, within GFF3385 at 205.894 kb on + strand, within GFF3385 at 205.895 kb on - strand, within GFF3385 at 205.895 kb on - strand, within GFF3385 at 205.895 kb on - strand, within GFF3385 at 205.963 kb on + strand, within GFF3385 at 205.963 kb on + strand, within GFF3385 at 205.964 kb on - strand, within GFF3385 at 205.996 kb on + strand, within GFF3385 at 205.997 kb on - strand, within GFF3385 at 205.997 kb on - strand, within GFF3385 at 206.029 kb on + strand, within GFF3385 at 206.029 kb on + strand, within GFF3385 at 206.029 kb on + strand, within GFF3385 at 206.029 kb on + strand, within GFF3385 at 206.030 kb on - strand, within GFF3385
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 203,937 + GFF3382 0.79 +2.9 203,937 + GFF3382 0.79 +0.6 203,938 - GFF3382 0.79 -1.6 204,230 + -0.3 204,230 + -0.1 204,231 - +2.4 204,680 + -0.6 204,681 - -0.3 205,171 - GFF3384 0.64 -0.8 205,171 - GFF3384 0.64 -0.8 205,468 + -0.4 205,469 - -0.2 205,469 - -0.3 205,528 + +0.3 205,528 + -0.1 205,735 + GFF3385 0.16 -0.2 205,735 + GFF3385 0.16 +0.2 205,736 - GFF3385 0.17 -0.1 205,736 - GFF3385 0.17 +0.4 205,870 + GFF3385 0.24 -0.5 205,870 + GFF3385 0.24 -0.2 205,870 + GFF3385 0.24 -0.4 205,870 + GFF3385 0.24 +0.4 205,870 + GFF3385 0.24 +0.9 205,871 - GFF3385 0.24 -1.0 205,871 - GFF3385 0.24 -0.5 205,871 - GFF3385 0.24 -0.4 205,871 - GFF3385 0.24 -0.5 205,871 - GFF3385 0.24 +0.1 205,871 - GFF3385 0.24 +0.4 205,874 - GFF3385 0.24 +0.4 205,894 + GFF3385 0.25 -0.9 205,895 - GFF3385 0.25 -0.0 205,895 - GFF3385 0.25 +0.2 205,895 - GFF3385 0.25 -0.7 205,963 + GFF3385 0.29 -0.1 205,963 + GFF3385 0.29 -0.4 205,964 - GFF3385 0.29 -0.6 205,996 + GFF3385 0.31 +0.1 205,997 - GFF3385 0.31 +0.3 205,997 - GFF3385 0.31 -0.3 206,029 + GFF3385 0.33 -0.6 206,029 + GFF3385 0.33 -0.7 206,029 + GFF3385 0.33 -0.8 206,029 + GFF3385 0.33 -0.4 206,030 - GFF3385 0.33 +0.9
Or see this region's nucleotide sequence