Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3376 and GFF3377 are separated by 58 nucleotides GFF3377 and GFF3378 are separated by 79 nucleotides GFF3378 and GFF3379 are separated by 6 nucleotides
GFF3376 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 195,787 to 197,343
GFF3376
GFF3377 - Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17), at 197,402 to 198,184
GFF3377
GFF3378 - hypothetical protein, at 198,264 to 199,076
GFF3378
GFF3379 - Aromatic--CoA ligase, at 199,083 to 200,894
GFF3379
Position (kb) 197
198
199 Strain fitness (log2 ratio) -2
-1
0
1
2 at 196.475 kb on + strand, within GFF3376 at 196.485 kb on - strand, within GFF3376 at 196.660 kb on + strand, within GFF3376 at 196.660 kb on + strand, within GFF3376 at 196.763 kb on + strand, within GFF3376 at 196.763 kb on + strand, within GFF3376 at 196.763 kb on + strand, within GFF3376 at 197.297 kb on + strand at 197.297 kb on + strand at 197.297 kb on + strand at 197.298 kb on - strand at 197.865 kb on + strand, within GFF3377 at 198.172 kb on - strand at 198.172 kb on - strand at 198.172 kb on - strand at 198.238 kb on - strand at 198.256 kb on - strand at 198.274 kb on + strand at 198.274 kb on + strand at 198.274 kb on + strand at 198.274 kb on + strand at 198.275 kb on - strand at 198.275 kb on - strand at 198.275 kb on - strand at 198.275 kb on - strand at 198.278 kb on + strand at 198.278 kb on + strand at 198.278 kb on + strand at 198.279 kb on - strand at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 199.183 kb on + strand at 199.183 kb on + strand at 199.183 kb on + strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.184 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 196,475 + GFF3376 0.44 -0.7 196,485 - GFF3376 0.45 +0.0 196,660 + GFF3376 0.56 -0.6 196,660 + GFF3376 0.56 +0.2 196,763 + GFF3376 0.63 -0.0 196,763 + GFF3376 0.63 +0.8 196,763 + GFF3376 0.63 -0.3 197,297 + -0.3 197,297 + +0.8 197,297 + +1.9 197,298 - +0.3 197,865 + GFF3377 0.59 +0.9 198,172 - +1.9 198,172 - -0.0 198,172 - +0.3 198,238 - +0.5 198,256 - +0.4 198,274 + -0.4 198,274 + -0.3 198,274 + -0.3 198,274 + -0.9 198,275 - -1.5 198,275 - -0.1 198,275 - -0.4 198,275 - +0.4 198,278 + -0.7 198,278 + -0.5 198,278 + -0.3 198,279 - -0.6 198,468 + GFF3378 0.25 -0.1 198,468 + GFF3378 0.25 -0.2 198,468 + GFF3378 0.25 +0.0 198,468 + GFF3378 0.25 +1.5 198,468 + GFF3378 0.25 +0.1 198,468 + GFF3378 0.25 +0.4 198,468 + GFF3378 0.25 -0.8 198,468 + GFF3378 0.25 -0.5 198,469 - GFF3378 0.25 +0.9 198,469 - GFF3378 0.25 -0.4 198,469 - GFF3378 0.25 +0.1 198,469 - GFF3378 0.25 -0.4 198,469 - GFF3378 0.25 -1.0 198,469 - GFF3378 0.25 +0.4 198,469 - GFF3378 0.25 -1.8 198,469 - GFF3378 0.25 -2.2 198,469 - GFF3378 0.25 +0.8 199,183 + -1.1 199,183 + +0.2 199,183 + -0.7 199,184 - -1.0 199,184 - -1.9 199,184 - +0.9 199,184 - -0.3 199,184 - -1.5
Or see this region's nucleotide sequence