Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3338 and GFF3339 are separated by 15 nucleotides GFF3339 and GFF3340 are separated by 16 nucleotides GFF3340 and GFF3341 overlap by 1 nucleotides
GFF3338 - Threonine efflux protein, at 162,725 to 163,339
GFF3338
GFF3339 - Chromosome (plasmid) partitioning protein ParA, at 163,355 to 164,275
GFF3339
GFF3340 - FIG00932469: hypothetical protein, at 164,292 to 164,837
GFF3340
GFF3341 - Chromosome (plasmid) partitioning protein ParB, at 164,837 to 165,805
GFF3341
Position (kb) 164
165 Strain fitness (log2 ratio) -1
0
1
2 at 164.373 kb on + strand, within GFF3340 at 164.373 kb on + strand, within GFF3340 at 164.373 kb on + strand, within GFF3340 at 164.373 kb on + strand, within GFF3340 at 164.373 kb on + strand, within GFF3340 at 164.373 kb on + strand, within GFF3340 at 164.374 kb on - strand, within GFF3340 at 164.374 kb on - strand, within GFF3340 at 164.374 kb on - strand, within GFF3340 at 164.374 kb on - strand, within GFF3340 at 164.682 kb on + strand, within GFF3340 at 164.683 kb on - strand, within GFF3340 at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.803 kb on + strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand at 165.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 164,373 + GFF3340 0.15 +0.2 164,373 + GFF3340 0.15 -0.6 164,373 + GFF3340 0.15 -0.2 164,373 + GFF3340 0.15 +0.4 164,373 + GFF3340 0.15 +1.9 164,373 + GFF3340 0.15 -0.7 164,374 - GFF3340 0.15 -0.6 164,374 - GFF3340 0.15 +1.2 164,374 - GFF3340 0.15 -1.1 164,374 - GFF3340 0.15 -1.5 164,682 + GFF3340 0.71 -0.6 164,683 - GFF3340 0.72 -0.6 165,803 + -1.0 165,803 + -1.1 165,803 + -0.2 165,803 + +0.8 165,803 + -0.1 165,803 + +1.9 165,803 + -0.4 165,803 + +0.4 165,804 - -0.9 165,804 - -0.1 165,804 - +0.0 165,804 - -0.1 165,804 - +0.3 165,804 - +0.7 165,804 - -0.2 165,804 - +0.4 165,804 - +0.2 165,804 - +0.1 165,804 - -0.1
Or see this region's nucleotide sequence