Strain Fitness in Variovorax sp. SCN45 around GFF33

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF32 and GFF33 overlap by 4 nucleotidesGFF33 and GFF34 are separated by 87 nucleotidesGFF34 and GFF35 overlap by 4 nucleotides GFF32 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 36,132 to 37,145 GFF32 GFF33 - Type IV pilus biogenesis protein PilZ, at 37,142 to 37,528 GFF33 GFF34 - Uncharacterized metal-dependent hydrolase YcfH, at 37,616 to 38,422 GFF34 GFF35 - FOG: Ankyrin repeat, at 38,419 to 39,099 GFF35 Position (kb) 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1at 37.186 kb on - strand, within GFF33at 37.238 kb on + strand, within GFF33at 37.238 kb on + strand, within GFF33at 37.238 kb on + strand, within GFF33at 37.238 kb on + strand, within GFF33at 37.238 kb on + strand, within GFF33at 37.238 kb on + strand, within GFF33at 37.238 kb on + strand, within GFF33at 37.239 kb on - strand, within GFF33at 37.239 kb on - strand, within GFF33at 37.239 kb on - strand, within GFF33at 37.239 kb on - strand, within GFF33at 37.239 kb on - strand, within GFF33at 37.239 kb on - strand, within GFF33at 37.239 kb on - strand, within GFF33at 37.247 kb on + strand, within GFF33at 37.247 kb on + strand, within GFF33at 37.247 kb on + strand, within GFF33at 37.247 kb on + strand, within GFF33at 37.247 kb on + strand, within GFF33at 37.247 kb on + strand, within GFF33at 37.247 kb on + strand, within GFF33at 37.247 kb on + strand, within GFF33at 37.248 kb on - strand, within GFF33at 37.248 kb on - strand, within GFF33at 37.248 kb on - strand, within GFF33at 37.248 kb on - strand, within GFF33at 37.248 kb on - strand, within GFF33at 37.248 kb on - strand, within GFF33at 37.248 kb on - strand, within GFF33at 37.298 kb on + strand, within GFF33at 37.299 kb on - strand, within GFF33at 37.319 kb on + strand, within GFF33at 37.319 kb on + strand, within GFF33at 37.319 kb on + strand, within GFF33at 37.319 kb on + strand, within GFF33at 37.319 kb on + strand, within GFF33at 37.319 kb on + strand, within GFF33at 37.319 kb on + strand, within GFF33at 37.319 kb on + strand, within GFF33at 37.319 kb on + strand, within GFF33at 37.320 kb on - strand, within GFF33at 37.320 kb on - strand, within GFF33at 37.320 kb on - strand, within GFF33at 37.320 kb on - strand, within GFF33at 37.320 kb on - strand, within GFF33at 37.561 kb on + strandat 37.561 kb on + strandat 37.561 kb on + strandat 37.562 kb on - strandat 37.562 kb on - strandat 37.772 kb on + strand, within GFF34at 37.772 kb on + strand, within GFF34at 37.772 kb on + strand, within GFF34at 37.772 kb on + strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.774 kb on - strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.902 kb on - strand, within GFF34at 37.902 kb on - strand, within GFF34at 37.902 kb on - strand, within GFF34at 37.904 kb on + strand, within GFF34at 37.904 kb on + strand, within GFF34at 37.904 kb on + strand, within GFF34at 37.905 kb on - strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.264 kb on + strand, within GFF34at 38.264 kb on + strand, within GFF34at 38.309 kb on + strand, within GFF34at 38.309 kb on + strand, within GFF34at 38.309 kb on + strand, within GFF34at 38.309 kb on + strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.318 kb on + strand, within GFF34at 38.318 kb on + strand, within GFF34at 38.318 kb on + strand, within GFF34at 38.319 kb on - strand, within GFF34at 38.319 kb on - strand, within GFF34at 38.319 kb on - strand, within GFF34at 38.319 kb on - strand, within GFF34at 38.319 kb on - strand, within GFF34at 38.446 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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37,186 - GFF33 0.11 -1.3
37,238 + GFF33 0.25 -1.2
37,238 + GFF33 0.25 -0.2
37,238 + GFF33 0.25 -2.3
37,238 + GFF33 0.25 -0.4
37,238 + GFF33 0.25 +0.2
37,238 + GFF33 0.25 -0.3
37,238 + GFF33 0.25 -1.4
37,239 - GFF33 0.25 -0.1
37,239 - GFF33 0.25 -0.8
37,239 - GFF33 0.25 +1.0
37,239 - GFF33 0.25 -0.4
37,239 - GFF33 0.25 -0.5
37,239 - GFF33 0.25 +0.0
37,239 - GFF33 0.25 -0.8
37,247 + GFF33 0.27 -0.2
37,247 + GFF33 0.27 -0.1
37,247 + GFF33 0.27 -0.5
37,247 + GFF33 0.27 -1.0
37,247 + GFF33 0.27 -0.8
37,247 + GFF33 0.27 -1.3
37,247 + GFF33 0.27 +1.2
37,247 + GFF33 0.27 -0.3
37,248 - GFF33 0.27 -0.1
37,248 - GFF33 0.27 -1.1
37,248 - GFF33 0.27 -0.0
37,248 - GFF33 0.27 -3.5
37,248 - GFF33 0.27 -0.1
37,248 - GFF33 0.27 -1.0
37,248 - GFF33 0.27 +0.2
37,298 + GFF33 0.40 -1.6
37,299 - GFF33 0.41 -1.5
37,319 + GFF33 0.46 -1.4
37,319 + GFF33 0.46 -1.0
37,319 + GFF33 0.46 -1.3
37,319 + GFF33 0.46 -0.6
37,319 + GFF33 0.46 -1.9
37,319 + GFF33 0.46 -1.4
37,319 + GFF33 0.46 +0.0
37,319 + GFF33 0.46 -1.0
37,319 + GFF33 0.46 -0.5
37,320 - GFF33 0.46 -0.9
37,320 - GFF33 0.46 -0.6
37,320 - GFF33 0.46 -1.4
37,320 - GFF33 0.46 -1.5
37,320 - GFF33 0.46 -1.5
37,561 + -0.9
37,561 + -0.0
37,561 + -0.7
37,562 - -0.0
37,562 - -0.4
37,772 + GFF34 0.19 +0.3
37,772 + GFF34 0.19 -0.9
37,772 + GFF34 0.19 -1.3
37,772 + GFF34 0.19 +0.3
37,773 - GFF34 0.19 -0.8
37,773 - GFF34 0.19 -0.4
37,773 - GFF34 0.19 -0.5
37,773 - GFF34 0.19 +1.2
37,773 - GFF34 0.19 +0.8
37,773 - GFF34 0.19 -1.8
37,774 - GFF34 0.20 -1.1
37,901 + GFF34 0.35 -0.4
37,901 + GFF34 0.35 -0.6
37,901 + GFF34 0.35 -0.3
37,901 + GFF34 0.35 +0.5
37,901 + GFF34 0.35 -0.5
37,901 + GFF34 0.35 +0.6
37,902 - GFF34 0.35 +0.5
37,902 - GFF34 0.35 -0.8
37,902 - GFF34 0.35 -0.3
37,904 + GFF34 0.36 -0.5
37,904 + GFF34 0.36 -0.7
37,904 + GFF34 0.36 +0.3
37,905 - GFF34 0.36 -1.2
38,159 + GFF34 0.67 -0.3
38,159 + GFF34 0.67 +1.2
38,159 + GFF34 0.67 -0.5
38,159 + GFF34 0.67 -0.0
38,159 + GFF34 0.67 +0.2
38,159 + GFF34 0.67 +0.9
38,159 + GFF34 0.67 -0.8
38,160 - GFF34 0.67 -0.8
38,160 - GFF34 0.67 +0.1
38,160 - GFF34 0.67 -0.0
38,160 - GFF34 0.67 -0.3
38,160 - GFF34 0.67 -0.8
38,160 - GFF34 0.67 -0.5
38,264 + GFF34 0.80 +0.9
38,264 + GFF34 0.80 +0.6
38,309 + GFF34 0.86 +0.5
38,309 + GFF34 0.86 -0.6
38,309 + GFF34 0.86 -0.3
38,309 + GFF34 0.86 -0.0
38,310 - GFF34 0.86 -0.3
38,310 - GFF34 0.86 -0.6
38,310 - GFF34 0.86 -0.6
38,310 - GFF34 0.86 +0.9
38,310 - GFF34 0.86 -0.2
38,310 - GFF34 0.86 -0.8
38,310 - GFF34 0.86 +0.7
38,310 - GFF34 0.86 +0.8
38,318 + GFF34 0.87 +0.4
38,318 + GFF34 0.87 -0.4
38,318 + GFF34 0.87 +0.5
38,319 - GFF34 0.87 -0.8
38,319 - GFF34 0.87 -0.3
38,319 - GFF34 0.87 -1.4
38,319 - GFF34 0.87 -0.4
38,319 - GFF34 0.87 -0.9
38,446 + +0.2

Or see this region's nucleotide sequence