Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3248 and GFF3249 are separated by 181 nucleotides GFF3249 and GFF3250 overlap by 4 nucleotides GFF3250 and GFF3251 are separated by 296 nucleotides
GFF3248 - NADP-dependent malic enzyme (EC 1.1.1.40), at 63,622 to 65,970
GFF3248
GFF3249 - Guanyl-specific ribonuclease (EC 3.1.27.3), at 66,152 to 66,565
GFF3249
GFF3250 - Barstar, ribonuclease (Barnase) inhibitor, at 66,562 to 67,041
GFF3250
GFF3251 - SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182), at 67,338 to 68,105
GFF3251
Position (kb) 66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 65.805 kb on + strand at 65.805 kb on + strand at 65.805 kb on + strand at 65.805 kb on + strand at 65.806 kb on - strand at 65.806 kb on - strand at 65.812 kb on + strand at 65.813 kb on - strand at 65.968 kb on + strand at 65.968 kb on + strand at 65.968 kb on + strand at 65.968 kb on + strand at 65.969 kb on - strand at 65.969 kb on - strand at 65.969 kb on - strand at 65.969 kb on - strand at 65.973 kb on + strand at 65.973 kb on + strand at 65.973 kb on + strand at 65.973 kb on + strand at 65.973 kb on + strand at 65.974 kb on - strand at 65.974 kb on - strand at 65.974 kb on - strand at 65.998 kb on + strand at 65.998 kb on + strand at 65.999 kb on - strand at 65.999 kb on - strand at 66.051 kb on + strand at 66.051 kb on + strand at 66.161 kb on + strand at 66.161 kb on + strand at 66.161 kb on + strand at 66.161 kb on + strand at 66.162 kb on - strand at 66.162 kb on - strand at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.323 kb on + strand, within GFF3249 at 66.324 kb on - strand, within GFF3249 at 66.324 kb on - strand, within GFF3249 at 66.324 kb on - strand, within GFF3249 at 66.324 kb on - strand, within GFF3249 at 66.324 kb on - strand, within GFF3249 at 66.324 kb on - strand, within GFF3249 at 66.324 kb on - strand, within GFF3249 at 66.356 kb on + strand, within GFF3249 at 66.356 kb on + strand, within GFF3249 at 66.356 kb on + strand, within GFF3249 at 66.357 kb on - strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.375 kb on + strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.376 kb on - strand, within GFF3249 at 66.422 kb on + strand, within GFF3249 at 66.422 kb on + strand, within GFF3249 at 66.431 kb on + strand, within GFF3249 at 66.431 kb on + strand, within GFF3249 at 66.431 kb on + strand, within GFF3249 at 66.431 kb on + strand, within GFF3249 at 66.432 kb on - strand, within GFF3249 at 66.432 kb on - strand, within GFF3249 at 66.521 kb on + strand, within GFF3249 at 66.522 kb on - strand, within GFF3249 at 66.522 kb on - strand, within GFF3249 at 66.522 kb on - strand, within GFF3249 at 66.536 kb on + strand at 66.536 kb on + strand at 66.536 kb on + strand at 66.536 kb on + strand at 66.536 kb on + strand at 66.536 kb on + strand at 66.536 kb on + strand at 66.536 kb on + strand at 66.537 kb on - strand at 66.537 kb on - strand at 66.537 kb on - strand at 66.537 kb on - strand at 66.537 kb on - strand at 66.537 kb on - strand at 66.537 kb on - strand at 66.621 kb on + strand, within GFF3250 at 66.648 kb on - strand, within GFF3250 at 66.648 kb on - strand, within GFF3250 at 67.039 kb on + strand at 67.055 kb on + strand at 67.055 kb on + strand at 67.055 kb on + strand at 67.055 kb on + strand at 67.055 kb on + strand at 67.055 kb on + strand at 67.055 kb on + strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.056 kb on - strand at 67.248 kb on + strand at 67.266 kb on + strand at 67.295 kb on + strand at 67.295 kb on + strand at 67.295 kb on + strand at 67.296 kb on - strand at 67.296 kb on - strand at 67.372 kb on + strand at 67.372 kb on + strand at 67.372 kb on + strand at 67.372 kb on + strand at 67.372 kb on + strand at 67.372 kb on + strand at 67.373 kb on - strand at 67.373 kb on - strand at 67.373 kb on - strand at 67.373 kb on - strand at 67.373 kb on - strand at 67.373 kb on - strand at 67.373 kb on - strand at 67.373 kb on - strand at 67.373 kb on - strand at 67.373 kb on - strand at 67.440 kb on + strand, within GFF3251 at 67.441 kb on - strand, within GFF3251 at 67.441 kb on - strand, within GFF3251 at 67.441 kb on - strand, within GFF3251 at 67.621 kb on + strand, within GFF3251 at 67.631 kb on - strand, within GFF3251 at 67.631 kb on - strand, within GFF3251 at 67.631 kb on - strand, within GFF3251 at 67.663 kb on + strand, within GFF3251 at 67.663 kb on + strand, within GFF3251 at 67.663 kb on + strand, within GFF3251 at 67.663 kb on + strand, within GFF3251 at 67.663 kb on + strand, within GFF3251 at 67.664 kb on - strand, within GFF3251 at 67.664 kb on - strand, within GFF3251 at 67.664 kb on - strand, within GFF3251 at 67.664 kb on - strand, within GFF3251 at 67.664 kb on - strand, within GFF3251 at 67.664 kb on - strand, within GFF3251 at 67.664 kb on - strand, within GFF3251 at 67.664 kb on - strand, within GFF3251 at 67.674 kb on - strand, within GFF3251 at 67.747 kb on + strand, within GFF3251 at 67.747 kb on + strand, within GFF3251 at 67.747 kb on + strand, within GFF3251 at 67.747 kb on + strand, within GFF3251 at 67.747 kb on + strand, within GFF3251 at 67.747 kb on + strand, within GFF3251 at 67.747 kb on + strand, within GFF3251 at 67.747 kb on + strand, within GFF3251 at 67.748 kb on - strand, within GFF3251 at 67.748 kb on - strand, within GFF3251 at 67.748 kb on - strand, within GFF3251 at 67.748 kb on - strand, within GFF3251 at 67.748 kb on - strand, within GFF3251 at 67.748 kb on - strand, within GFF3251 at 67.786 kb on + strand, within GFF3251 at 67.786 kb on + strand, within GFF3251 at 67.786 kb on + strand, within GFF3251 at 67.786 kb on + strand, within GFF3251 at 67.786 kb on + strand, within GFF3251 at 67.786 kb on + strand, within GFF3251 at 67.786 kb on + strand, within GFF3251 at 67.786 kb on + strand, within GFF3251 at 67.787 kb on - strand, within GFF3251 at 67.787 kb on - strand, within GFF3251 at 67.787 kb on - strand, within GFF3251 at 67.787 kb on - strand, within GFF3251 at 67.787 kb on - strand, within GFF3251 at 67.787 kb on - strand, within GFF3251
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 65,805 + -0.0 65,805 + +0.9 65,805 + -0.3 65,805 + -0.1 65,806 - -1.7 65,806 - +0.8 65,812 + -0.8 65,813 - -0.2 65,968 + -1.3 65,968 + +0.8 65,968 + -0.4 65,968 + -0.0 65,969 - +0.7 65,969 - +0.2 65,969 - -0.1 65,969 - +0.4 65,973 + +0.7 65,973 + +0.3 65,973 + -1.0 65,973 + +0.1 65,973 + -0.1 65,974 - -0.9 65,974 - -0.9 65,974 - -0.3 65,998 + -0.3 65,998 + -0.2 65,999 - +0.4 65,999 - +0.4 66,051 + +0.4 66,051 + -1.2 66,161 + -0.4 66,161 + -0.2 66,161 + -0.1 66,161 + -0.9 66,162 - +1.9 66,162 - +1.9 66,323 + GFF3249 0.41 +0.8 66,323 + GFF3249 0.41 -0.4 66,323 + GFF3249 0.41 -0.7 66,323 + GFF3249 0.41 +0.4 66,323 + GFF3249 0.41 -1.1 66,323 + GFF3249 0.41 -0.4 66,323 + GFF3249 0.41 +0.1 66,323 + GFF3249 0.41 +0.0 66,323 + GFF3249 0.41 -0.5 66,323 + GFF3249 0.41 +0.1 66,323 + GFF3249 0.41 +0.4 66,323 + GFF3249 0.41 +1.9 66,323 + GFF3249 0.41 -1.0 66,323 + GFF3249 0.41 +0.9 66,323 + GFF3249 0.41 +0.1 66,323 + GFF3249 0.41 -0.6 66,323 + GFF3249 0.41 -0.2 66,323 + GFF3249 0.41 -0.7 66,323 + GFF3249 0.41 +1.7 66,323 + GFF3249 0.41 -0.3 66,323 + GFF3249 0.41 -1.1 66,324 - GFF3249 0.42 +0.9 66,324 - GFF3249 0.42 -0.1 66,324 - GFF3249 0.42 +0.4 66,324 - GFF3249 0.42 -0.2 66,324 - GFF3249 0.42 +1.9 66,324 - GFF3249 0.42 -0.4 66,324 - GFF3249 0.42 +0.9 66,356 + GFF3249 0.49 +0.8 66,356 + GFF3249 0.49 -0.4 66,356 + GFF3249 0.49 -0.4 66,357 - GFF3249 0.50 +1.9 66,375 + GFF3249 0.54 +0.0 66,375 + GFF3249 0.54 +0.4 66,375 + GFF3249 0.54 -0.1 66,375 + GFF3249 0.54 +0.1 66,375 + GFF3249 0.54 -0.2 66,375 + GFF3249 0.54 -0.8 66,375 + GFF3249 0.54 +0.4 66,375 + GFF3249 0.54 -1.4 66,375 + GFF3249 0.54 -0.2 66,375 + GFF3249 0.54 +0.8 66,375 + GFF3249 0.54 -2.1 66,375 + GFF3249 0.54 -0.2 66,376 - GFF3249 0.54 +1.6 66,376 - GFF3249 0.54 +0.0 66,376 - GFF3249 0.54 +0.5 66,376 - GFF3249 0.54 +1.9 66,376 - GFF3249 0.54 -0.2 66,376 - GFF3249 0.54 -0.6 66,376 - GFF3249 0.54 -0.4 66,376 - GFF3249 0.54 +1.1 66,376 - GFF3249 0.54 +0.4 66,376 - GFF3249 0.54 -0.1 66,376 - GFF3249 0.54 +1.9 66,376 - GFF3249 0.54 -0.5 66,376 - GFF3249 0.54 -1.2 66,376 - GFF3249 0.54 -0.4 66,422 + GFF3249 0.65 -0.8 66,422 + GFF3249 0.65 -1.1 66,431 + GFF3249 0.67 -0.9 66,431 + GFF3249 0.67 -0.3 66,431 + GFF3249 0.67 +0.2 66,431 + GFF3249 0.67 -0.6 66,432 - GFF3249 0.68 +0.4 66,432 - GFF3249 0.68 +0.4 66,521 + GFF3249 0.89 +0.1 66,522 - GFF3249 0.89 +1.9 66,522 - GFF3249 0.89 -0.6 66,522 - GFF3249 0.89 +0.0 66,536 + +0.3 66,536 + -0.2 66,536 + -0.5 66,536 + -0.1 66,536 + +0.4 66,536 + +0.7 66,536 + +1.3 66,536 + +1.0 66,537 - +1.9 66,537 - +0.9 66,537 - +1.9 66,537 - +1.5 66,537 - +2.5 66,537 - -0.4 66,537 - -0.4 66,621 + GFF3250 0.12 -2.8 66,648 - GFF3250 0.18 -1.9 66,648 - GFF3250 0.18 +0.9 67,039 + -0.1 67,055 + -1.5 67,055 + -0.5 67,055 + -0.7 67,055 + +0.9 67,055 + -0.4 67,055 + +0.1 67,055 + +0.4 67,056 - -0.2 67,056 - -0.5 67,056 - +1.9 67,056 - -0.6 67,056 - +0.2 67,056 - -0.4 67,056 - -1.0 67,056 - -0.6 67,056 - -0.5 67,056 - -0.3 67,056 - -1.7 67,056 - -2.0 67,056 - +0.1 67,248 + +0.0 67,266 + -0.1 67,295 + -0.7 67,295 + +0.1 67,295 + +1.6 67,296 - -0.2 67,296 - -0.2 67,372 + +0.4 67,372 + +1.5 67,372 + -0.2 67,372 + +0.4 67,372 + +0.9 67,372 + -1.2 67,373 - -1.0 67,373 - +0.1 67,373 - -1.4 67,373 - -0.5 67,373 - -0.7 67,373 - +1.9 67,373 - -0.8 67,373 - -1.5 67,373 - +0.6 67,373 - -0.4 67,440 + GFF3251 0.13 -1.2 67,441 - GFF3251 0.13 +1.8 67,441 - GFF3251 0.13 +0.6 67,441 - GFF3251 0.13 +1.5 67,621 + GFF3251 0.37 +0.4 67,631 - GFF3251 0.38 +1.1 67,631 - GFF3251 0.38 +0.4 67,631 - GFF3251 0.38 -0.1 67,663 + GFF3251 0.42 +0.4 67,663 + GFF3251 0.42 +0.9 67,663 + GFF3251 0.42 -1.1 67,663 + GFF3251 0.42 -1.1 67,663 + GFF3251 0.42 +0.6 67,664 - GFF3251 0.42 -0.9 67,664 - GFF3251 0.42 +0.2 67,664 - GFF3251 0.42 -1.8 67,664 - GFF3251 0.42 -0.7 67,664 - GFF3251 0.42 -1.6 67,664 - GFF3251 0.42 -0.4 67,664 - GFF3251 0.42 -0.5 67,664 - GFF3251 0.42 -1.1 67,674 - GFF3251 0.44 -0.1 67,747 + GFF3251 0.53 -0.3 67,747 + GFF3251 0.53 -0.2 67,747 + GFF3251 0.53 +0.9 67,747 + GFF3251 0.53 -0.1 67,747 + GFF3251 0.53 -0.1 67,747 + GFF3251 0.53 -0.5 67,747 + GFF3251 0.53 +0.4 67,747 + GFF3251 0.53 -0.8 67,748 - GFF3251 0.53 -0.6 67,748 - GFF3251 0.53 -0.8 67,748 - GFF3251 0.53 -0.2 67,748 - GFF3251 0.53 -0.5 67,748 - GFF3251 0.53 -0.6 67,748 - GFF3251 0.53 +0.3 67,786 + GFF3251 0.58 +0.6 67,786 + GFF3251 0.58 -0.6 67,786 + GFF3251 0.58 +0.4 67,786 + GFF3251 0.58 -0.4 67,786 + GFF3251 0.58 -1.3 67,786 + GFF3251 0.58 -0.1 67,786 + GFF3251 0.58 +1.0 67,786 + GFF3251 0.58 +0.1 67,787 - GFF3251 0.58 -0.0 67,787 - GFF3251 0.58 -1.1 67,787 - GFF3251 0.58 -0.0 67,787 - GFF3251 0.58 +0.1 67,787 - GFF3251 0.58 +3.9 67,787 - GFF3251 0.58 -0.9
Or see this region's nucleotide sequence