Strain Fitness in Variovorax sp. SCN45 around GFF3229
Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Community=Locust bean gum; Passage=1 |
---|---|---|---|---|---|
remove | |||||
49,154 | + | GFF3228 | 0.45 | -0.1 | |
49,280 | + | GFF3228 | 0.58 | -1.1 | |
49,469 | + | GFF3228 | 0.79 | -1.1 | |
49,505 | + | GFF3228 | 0.83 | -1.1 | |
49,506 | - | GFF3228 | 0.83 | -0.2 | |
49,506 | - | GFF3228 | 0.83 | -0.2 | |
50,081 | + | GFF3229 | 0.73 | -1.2 | |
50,081 | + | GFF3229 | 0.73 | -1.6 | |
50,082 | - | GFF3229 | 0.74 | -1.1 | |
50,082 | - | GFF3229 | 0.74 | -0.6 | |
50,082 | - | GFF3229 | 0.74 | -0.4 | |
50,242 | + | -1.4 | |||
50,242 | + | -0.1 | |||
50,749 | + | GFF3231 | 0.28 | +1.9 | |
50,948 | + | GFF3231 | 0.61 | -0.3 | |
50,948 | + | GFF3231 | 0.61 | -0.7 | |
50,948 | + | GFF3231 | 0.61 | -0.3 | |
50,948 | + | GFF3231 | 0.61 | +0.5 | |
50,949 | + | GFF3231 | 0.61 | -0.6 | |
50,949 | - | GFF3231 | 0.61 | -0.8 | |
50,949 | - | GFF3231 | 0.61 | -0.6 | |
50,949 | - | GFF3231 | 0.61 | +0.8 | |
51,011 | + | GFF3231 | 0.71 | +0.2 | |
51,011 | + | GFF3231 | 0.71 | -2.1 |
Or see this region's nucleotide sequence