Strain Fitness in Variovorax sp. SCN45 around GFF3229

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3228 and GFF3229 are separated by 63 nucleotidesGFF3229 and GFF3230 are separated by 100 nucleotidesGFF3230 and GFF3231 overlap by 4 nucleotidesGFF3231 and GFF3232 overlap by 4 nucleotides GFF3228 - hypothetical protein, at 48,736 to 49,665 GFF3228 GFF3229 - hypothetical protein, at 49,729 to 50,208 GFF3229 GFF3230 - no description, at 50,309 to 50,578 GFF3230 GFF3231 - hypothetical protein, at 50,575 to 51,186 GFF3231 GFF3232 - Phage lysozyme R (EC 3.2.1.17), at 51,183 to 51,758 GFF3232 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 49.154 kb on + strand, within GFF3228at 49.280 kb on + strand, within GFF3228at 49.469 kb on + strand, within GFF3228at 49.505 kb on + strand, within GFF3228at 49.506 kb on - strand, within GFF3228at 49.506 kb on - strand, within GFF3228at 50.081 kb on + strand, within GFF3229at 50.081 kb on + strand, within GFF3229at 50.082 kb on - strand, within GFF3229at 50.082 kb on - strand, within GFF3229at 50.082 kb on - strand, within GFF3229at 50.242 kb on + strandat 50.242 kb on + strandat 50.749 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.949 kb on + strand, within GFF3231at 50.949 kb on - strand, within GFF3231at 50.949 kb on - strand, within GFF3231at 50.949 kb on - strand, within GFF3231at 51.011 kb on + strand, within GFF3231at 51.011 kb on + strand, within GFF3231

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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49,154 + GFF3228 0.45 -0.1
49,280 + GFF3228 0.58 -1.1
49,469 + GFF3228 0.79 -1.1
49,505 + GFF3228 0.83 -1.1
49,506 - GFF3228 0.83 -0.2
49,506 - GFF3228 0.83 -0.2
50,081 + GFF3229 0.73 -1.2
50,081 + GFF3229 0.73 -1.6
50,082 - GFF3229 0.74 -1.1
50,082 - GFF3229 0.74 -0.6
50,082 - GFF3229 0.74 -0.4
50,242 + -1.4
50,242 + -0.1
50,749 + GFF3231 0.28 +1.9
50,948 + GFF3231 0.61 -0.3
50,948 + GFF3231 0.61 -0.7
50,948 + GFF3231 0.61 -0.3
50,948 + GFF3231 0.61 +0.5
50,949 + GFF3231 0.61 -0.6
50,949 - GFF3231 0.61 -0.8
50,949 - GFF3231 0.61 -0.6
50,949 - GFF3231 0.61 +0.8
51,011 + GFF3231 0.71 +0.2
51,011 + GFF3231 0.71 -2.1

Or see this region's nucleotide sequence