Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3164 and GFF3165 overlap by 4 nucleotides GFF3165 and GFF3166 are separated by 111 nucleotides GFF3166 and GFF3167 overlap by 4 nucleotides
GFF3164 - Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2), at 603,152 to 604,135
GFF3164
GFF3165 - Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2), at 604,132 to 605,868
GFF3165
GFF3166 - Transcriptional regulator, IclR family, at 605,980 to 606,780
GFF3166
GFF3167 - BUG/TctC family periplasmic protein, at 606,777 to 607,763
GFF3167
Position (kb) 604
605
606 Strain fitness (log2 ratio) -2
-1
0
1 at 603.281 kb on + strand, within GFF3164 at 603.282 kb on - strand, within GFF3164 at 603.282 kb on - strand, within GFF3164 at 603.569 kb on + strand, within GFF3164 at 603.569 kb on + strand, within GFF3164 at 603.654 kb on - strand, within GFF3164 at 603.732 kb on - strand, within GFF3164 at 603.798 kb on - strand, within GFF3164 at 604.966 kb on + strand, within GFF3165 at 604.966 kb on + strand, within GFF3165 at 605.219 kb on + strand, within GFF3165 at 605.770 kb on + strand at 605.771 kb on - strand at 605.876 kb on - strand at 605.882 kb on - strand at 605.882 kb on - strand at 605.882 kb on - strand at 605.882 kb on - strand at 605.923 kb on - strand at 605.923 kb on - strand at 605.923 kb on - strand at 605.923 kb on - strand at 606.308 kb on - strand, within GFF3166 at 606.347 kb on - strand, within GFF3166
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 603,281 + GFF3164 0.13 +0.2 603,282 - GFF3164 0.13 -1.2 603,282 - GFF3164 0.13 -1.2 603,569 + GFF3164 0.42 -0.4 603,569 + GFF3164 0.42 -0.1 603,654 - GFF3164 0.51 -0.0 603,732 - GFF3164 0.59 -0.7 603,798 - GFF3164 0.66 +0.1 604,966 + GFF3165 0.48 -0.2 604,966 + GFF3165 0.48 -1.3 605,219 + GFF3165 0.63 -0.2 605,770 + -0.0 605,771 - -0.2 605,876 - -0.5 605,882 - -0.8 605,882 - -0.4 605,882 - -0.6 605,882 - -0.5 605,923 - -2.5 605,923 - -0.2 605,923 - -0.2 605,923 - +0.1 606,308 - GFF3166 0.41 -0.9 606,347 - GFF3166 0.46 +0.3
Or see this region's nucleotide sequence